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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGAAACGATATCCTCACCATCGAACTAAGGAAATTGCTAAGTCCATTCAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctctttctagttggacatagttttggaagaggtctagttggttgtctttaattttcaaggaacctcttttgcaaggtatcagttaaatttccaatcttcataacatgagtgggtggttgttttgacgcag

Basic information

species Physcomitrella patens
transcript PP1S33_211V6.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359001|gb|DC957749.1|DC957749
EST:     CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTG                         GTATGGATCTTGGGCAGCGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
genomic: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctc ... tttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
EST: gi|162252971|gb|FC429032.1|FC429032
EST:     CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTG                         GTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
genomic: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctc ... tttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
EST: gi|162252972|gb|FC429033.1|FC429033
EST:     CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTG                         GTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
genomic: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctc ... tttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
EST: gi|67725482|gb|BJ975741.1|BJ975741
EST:     CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTG                         GTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
genomic: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctc ... tttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT