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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCGCTAATCAATGAGGCTTCGTTGAAAAAGgtgagagctttactcttaaaatttctggttacactcgattatcaaaacccttataaagcatcgacctcttgatttgttttattctaaagatgatgatgat...

Basic information

species Physcomitrella patens
transcript PP1S279_72V6.2
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18335538|gb|BJ167558.1|BJ167558
EST:     CTTCGTTGAAAAAG                         GTGAAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: CTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|208391821|gb|DC937997.1|DC937997
EST:     GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: GGACCGCTAATCAATGAGGCTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|162188380|gb|FC364250.1|FC364250
EST:     GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: GGACCGCTAATCAATGAGGCTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|67695860|gb|BJ956093.1|BJ956093
EST:     GGACCGCTAATCAATGAGGCTTCGTTGAAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: GGACCGCTAATCAATGAGGCTTCGTTG-AAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|37842855|gb|BJ600863.1|BJ600863
EST:     AGGCTTCGTTGAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: AGGCTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|37847436|gb|BJ605444.1|BJ605444
EST:     GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: GGACCGCTAATCAATGAGGCTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|208345206|gb|DC925476.1|DC925476
EST:     GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: GGACCGCTAATCAATGAGGCTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|37851842|gb|BJ609850.1|BJ609850
EST:     GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: GGACCGCTAATCAATGAGGCTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|162167720|gb|FC344034.1|FC344034
EST:     GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: GGACCGCTAATCAATGAGGCTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
EST: gi|208365822|gb|DC951057.1|DC951057
EST:     GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG                         GTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG
genomic: GGACCGCTAATCAATGAGGCTTCGTTGAAAAAGgtgagagctt ... ggctccacagGTGGAAGCGCATGTCCAAGATGCAGTGTCCAAG