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AACAGAATACGCTGTGAATGTGGTCAAGCATGTGTACCCTGGTCACATCGTCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAACgtgagcctgtgtttgtttacttatgatttcaagccgtttctttggatgtagatttggtgtgttttctgtgtgtcgagtgggattcgtaacactcatctcc...
species | Physcomitrella patens |
transcript | PP1S276_96V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAAC GTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCTEST: gi|162178338|gb|FC355160.1|FC355160
genomic: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAACgtgagcctgt ... gggcatgcagGTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCT
EST: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAAC GTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCTEST: gi|162177778|gb|FC354612.1|FC354612
genomic: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAACgtgagcctgt ... gggcatgcagGTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCT
EST: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAAC GTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCTEST: gi|100373379|gb|BY949300.1|BY949300
genomic: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAACgtgagcctgt ... gggcatgcagGTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCT
EST: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAAC GTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCTEST: gi|100366973|gb|BY948304.1|BY948304
genomic: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAACgtgagcctgt ... gggcatgcagGTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCT
EST: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAAC GTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCTEST: gi|162195521|gb|FC370912.1|FC370912
genomic: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAACgtgagcctgt ... gggcatgcagGTGAATATCGTCATGGATCTCGTAGAGGGGGAAGATTTTACGCAGGCAGCT
EST: TCTTCCAGTTCAACTGCACCCACACCATCGCAGAGCAGCTTCTGGAGAAC GTGAATATCGTCATGGATCTCGTAGAGGGG
genomic: TCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAACgtgagcctgt ... gggcatgcagGTGAATATCGTCATGGATCTCGTAGAGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAGAATACGCTGTGAATGTGGTCAAGCATGTGTACCCTGGTCACATCGTCTTCCAGTTCAACTGCACCAACACCATCGCAGAGCAGCTTCTGGAGAACgtgagcctgtgtttgtttacttatgatttcaagccgtttctttggatgtagatttggtgtgttttctgtgtgtcgagtgggattcgtaacactcatctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA