Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgccttggacttcttagatagtttctatttatacagcaatttccgatctccacctaattgagtagaatttgatttatcactccactgttcctac...

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.3
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162170243|gb|FC347363.1|FC347363
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162211596|gb|FC387676.1|FC387676
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162191926|gb|FC366931.1|FC366931
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|15730173|gb|BI741714.1|BI741714
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GCTGCATGGGAGATATTTACACCATTGTTGCATCGGATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|67694438|gb|BJ954671.1|BJ954671
EST:     TNTTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162280090|gb|FC456484.1|FC456484
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162243422|gb|FC425118.1|FC425118
EST:     GGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: GGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162208214|gb|FC384318.1|FC384318
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGCAGGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
EST: gi|162243423|gb|FC425119.1|FC425119
EST:     GGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA
genomic: GGGATGAATTGCGGgtattttgcc ... ctctgctcagGTTGCATGGGAGATATTTACACCATTGTTGCATCGTATTGATGCTGGAAAA