1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CATCGACGCCCTTGCACGAATGGTGGATCCGTCGTTGAAGGGCATCTACCCTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctcttcccatttactacgttaacattacagagttaatactgttgcctgattagctcgatcggtatcctagcggtcttgcaaagggtcataatacc...
species | Physcomitrella patens |
transcript | PP1S204_22V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCANGCACTTGTAEST: gi|162267430|gb|FC443973.1|FC443973
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|162260498|gb|FC435085.1|FC435085
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|162267588|gb|FC444651.1|FC444651
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|15261634|gb|BI436944.1|BI436944
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|162166497|gb|FC343194.1|FC343194
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|162194242|gb|FC369504.1|FC369504
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|162243391|gb|FC417092.1|FC417092
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|162248155|gb|FC419705.1|FC419705
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|162248154|gb|FC419704.1|FC419704
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|162194241|gb|FC369503.1|FC369503
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTAEST: gi|37850223|gb|BJ608231.1|BJ608231
genomic: CTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
EST: AATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAG CCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
genomic: AATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctctt ... tgatgtgcagCCGGAGCCCGAGTTCCGACCCCCGATGTCTGAAGTGGTGCAGGCACTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCGACGCCCTTGCACGAATGGTGGATCCGTCGTTGAAGGGCATCTACCCTGCTAAATCACTCTCTCGGTTTGCTGATATAGTCGCCCTTTGCGTCCAGgtattctcttcccatttactacgttaacattacagagttaatactgttgcctgattagctcgatcggtatcctagcggtcttgcaaagggtcataatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT