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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggactttattcttttaagttaattttaatgtccaatgaattttttgggcttgacgtacttactgggataattgaatacaattgtcaatcagcta...

Basic information

species Physcomitrella patens
transcript PP1S192_39V6.5
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162173094|gb|FC349200.1|FC349200
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|162218573|gb|FC394539.1|FC394539
EST:     GAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: GAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|162279045|gb|FC455072.1|FC455072
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|37842189|gb|BJ600197.1|BJ600197
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|37841660|gb|BJ599668.1|BJ599668
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|37843663|gb|BJ601671.1|BJ601671
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|37850762|gb|BJ608770.1|BJ608770
EST:     TATTCGTGGGGATCAACAACATTTTGTCCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|208381262|gb|DC919152.1|DC919152
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|7584227|gb|AW700124.1|AW700124
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|37821380|gb|BJ579446.1|BJ579446
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|37851014|gb|BJ609022.1|BJ609022
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|162227769|gb|FC402697.1|FC402697
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
EST: gi|37850441|gb|BJ608449.1|BJ608449
EST:     TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG                         GTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG
genomic: TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGGgtacttggac ... tttctatcagGTTGCATGGGAGATATTTACACCATTGCTACATCGAATAGATGTCGGAAAG