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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttggctatcctagctctatcgtcttataacgtatcaaaattccttctctttttttttttcttttttttttctttttttttctttttttttcttt...

Basic information

species Physcomitrella patens
transcript PP1S14_250V6.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S14_250V6.2 (Physcomitrella patens), 5'ss of exon 14
lower sequence: EFJ38655 (Selaginella moellendorffii), 5'ss of exon 14
GCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttggctatcctagctctatcgtcttataacgtatcaaaattccttctctttttttttttcttttttttttctttttttttctttttttttcttt
   || ||||||||||||||||| ||| | || |||||||| ||  |||| |||||||| || ||||||||  ||||||| |||   ||| ||| || | | |  | ||    |||    ||| || | | |  | |                                         
AACAACGTTGCCAAGTTTGAAGGACACTCTGGGCCCGTGACTGAACTATCGTTCTCTGAAAATGGTTACTTCCTGGCTgtgagt---gct-tccgagttat-tgtttttggtgcgttgttaaactcgtacgccgtgtgcag-------------------------------------

upper sequence: PP1S14_250V6.2 (Physcomitrella patens), 5'ss of exon 14
lower sequence: EFJ31494 (Selaginella moellendorffii), 5'ss of exon 14
GCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttggctatcctagctctatcgtcttataacgtatcaaaattccttctctttttttttttcttttttttttctttttttttctttttttttcttt
   || ||||||||||||||||| ||| | || |||||||| ||  |||| |||||||| || ||||||||  ||||||| |||   ||| ||| || | | |  | ||    |||    ||| || | | |  | |                                         
AACAACGTTGCCAAGTTTGAAGGACACTCTGGGCCCGTGACTGAACTATCGTTCTCTGAAAATGGTTACTTCCTGGCTgtgagt---gct-tccgagttat-tgtttttggtgcgttgttaaactcgtacgccctgtgcag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67725231|gb|BJ975490.1|BJ975490
EST:     CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
genomic: CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
EST: gi|162238755|gb|FC419053.1|FC419053
EST:     CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
genomic: CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
EST: gi|37822061|gb|BJ580127.1|BJ580127
EST:     CTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
genomic: CTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
EST: gi|6102231|gb|AW126701.1|AW126701
EST:     CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
genomic: CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
EST: gi|19787424|gb|BQ040623.1|BQ040623
EST:     CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
genomic: CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
EST: gi|67726008|gb|BJ976267.1|BJ976267
EST:     CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
genomic: CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
EST: gi|162182529|gb|FC357504.1|FC357504
EST:     CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACA
genomic: CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACA
EST: gi|162257669|gb|FC433596.1|FC433596
EST:     CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
genomic: CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
EST: gi|162182528|gb|FC357503.1|FC357503
EST:     CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCT                         ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC
genomic: CAGGACCCGTGACGGATATATCTTTCTCTGAGAACGGTTACTTTTTGGCTgtaagtttgg ... ttttttccagACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAAC