1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTCATCATGGAGGTGCGGGGACGACTGCTGCTGGTCTTCGGGCTGCGgtaataaattctatttacttgacttgttttctgtcttgctttcgcaatagtgtgccttgattattaatccacttccttggactgattttgattgaggtataataaaatccaggaattccactcttgtcaagttttgaattaaggtgcattatttgcttgtaatctttcag
species | Physcomitrella patens |
transcript | PP1S110_116V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTTCATCATGGAGGTGCGGGGACGACTGCTGCTGGTCTTCGGGCTGCG TGTCCCACGACAATTGTTCCGTTTTTTGGGGATCAACCATTTTGGGGCGAAEST: gi|162264491|gb|FC440839.1|FC440839
genomic: GTTCATCATGGAGGTGCGGGGACGACTGCTGCTGGTCTTCGGGCTGCGgtaataaatt ... aatctttcagTGTCCCACGACAATTGTTCCGTTTTTTGGGGATCAACCATTTTGGGGCGAA
EST: GTTCATCATGGAGGTGCGGGGACGACTGCTGCTGGTCTTCGGGCTGCG TGTCCCACGACAATTGTTCCGTTTTTTGGGGATCAACCATTTTGGGGCGAA
genomic: GTTCATCATGGAGGTGCGGGGACGACTGCTGCTGGTCTTCGGGCTGCGgtaataaatt ... aatctttcagTGTCCCACGACAATTGTTCCGTTTTTTGGGGATCAACCATTTTGGGGCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATCATGGAGGTGCGGGGACGACTGCTGCTGGTCTTCGGGCTGCGgtaataaattctatttacttgacttgttttctgtcttgctttcgcaatagtgtgccttgattattaatccacttccttggactgattttgattgaggtataataaaatccaggaattccactcttgtcaagttttgaattaaggtgcattatttgcttgtaatctttcag
- - - CATGGA
- - - - TGGAGG
- - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - GCTGCT