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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGCAATTTTTGTGCAGTCATCCAGCTTTGTATATTCTACTTCGGGCAGTGGACCACTTCGCTGCAACTTACAACAGATTTCCGGGTGCCTTTGACGGgtatgcttttactgcattttagatctcatggtcgtttttgattgatgcaacttgactcttgttatagatgagatttctgcgtgatcaggtactgtagttt...

Basic information

species Physcomitrella patens
transcript PP1S84_287V6.6
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7583261|gb|AW699425.1|AW699425
EST:     GTGCCTTTGACGG                         AGAAATTGAGGAGGATGTATCGAGGTTGAAGTCATTAGCAGTAGGATTATT
genomic: GTGCCTTTGACGGgtatgctttt ... cgtgcattagAGAAATTGAGGAGGATGTATCGAGGTTGAAGTCATTAGCAGTAGGATTATT
EST: gi|37827173|gb|BJ585185.1|BJ585185
EST:     GTGGACCACTTCGCTGCAACTTACAACAGATTTCCGGGTGCCTTTGACGG                         AGAAATTGAGGAGGATGTATCGAGGTTGAAGTCATTAGCAGTAGGGTTATT
genomic: GTGGACCACTTCGCTGCAACTTACAACAGATTTCCGGGTGCCTTTGACGGgtatgctttt ... cgtgcattagAGAAATTGAGGAGGATGTATCGAGGTTGAAGTCATTAGCAGTAGGATTATT