Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACATGCAACCACCTGCGAAATGGGATAATCCTTTCAATCCAGCTTATTCATACTGGGCGTACTACGTGTACGCCAATCTCTATGTCCTCAACAAGgtactgcattctcgactagatactttaaagggaaattacgaagtcttgacataacctgattctttaatgcaagcagggtcaatatgttttgcaagatcgt...

Basic information

species Physcomitrella patens
transcript PP1S77_89V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S77_89V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ17267 (Selaginella moellendorffii), 5'ss of exon 12
GAAGCACATGCAACCACCTGCGAAATGGGATAATCCTTTCAATCCAGCTTATTCATACTGGGCGTACTACGTGTACGCCAATCTCTATGTCCTCAACAAGgtactgcattctcgactagatactttaaagggaaattacgaagtcttgacataacctgattctttaatgcaagcagggtcaatatgttttgcaagatcgt
 ||||| |||||  | || |   | ||| | | | ||||||||||||| || || |||||||| || |||||||| |||||||||||    || |||||||||     ||||    |   | || |  |      |      ||  ||   ||                                               
TAAGCATATGCAGACTCCCGAACAGTGGCAAATTTCTTTCAATCCAGCATACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAGgtaagcttttcttagtt---ttctcttcaatacgttcgaactgtgctgttgtag----------------------------------------------

upper sequence: PP1S77_89V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ30909 (Selaginella moellendorffii), 5'ss of exon 12
GAAGCACATGCAACCACCTGCGAAATGGGATAATCCTTTCAATCCAGCTTATTCATACTGGGCGTACTACGTGTACGCCAATCTCTATGTCCTCAACAAGgtactgcattctcgactagatactttaaagggaaattacgaagtcttgacataacctgattctttaatgcaagcagggtcaatatgttttgcaagatcgt
 ||||| |||||  | || |   | ||| | | | ||||||||||||| || || |||||||| || |||||||| |||||||||||    || |||||||||     ||||    |   | || |  |      |      || ||    ||                                               
TAAGCATATGCAGACTCCCGAACAGTGGCAAATTTCTTTCAATCCAGCATACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAGgtaagcttttcttagtt---ttctcttcaatacgttcgaactgtgttattgtag----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162268981|gb|FC445473.1|FC445473
EST:     ATTCATACTGGGCGTACTACGTGTACGCCAATCTCTATGTCCTCAACAAG                         TTGAGGGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGA
genomic: ATTCATACTGGGCGTACTACGTGTACGCCAATCTCTATGTCCTCAACAAGgtactgcatt ... tttgtggcagTTGAGGGAATCCAAGAACCTTTCAACTATTAAGTTCCGACCACACACTGGA