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CCATGGCACTCTCTTACAGTGCCGGTCGGGCTGGTGGGACGATGACCGGTGTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaaagaaaaactcaattttctgctaattataatcgtaagcaaacttaaactaaattaaaaaagaacttaacaaaacagatcttatcataggga...
species | Physcomitrella patens |
transcript | PP1S73_243V6.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|162244459|gb|FC422632.1|FC422632
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|67692973|gb|BJ953206.1|BJ953206
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|162155913|gb|FC332462.1|FC332462
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|162244458|gb|FC422631.1|FC422631
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|162171164|gb|FC347778.1|FC347778
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|162160112|gb|FC335982.1|FC335982
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|67694754|gb|BJ954987.1|BJ954987
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|208348677|gb|DC926352.1|DC926352
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCAEST: gi|162204514|gb|FC381937.1|FC381937
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
EST: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAG GATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
genomic: GTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaa ... cccaatgtagGATTGGCTACTTGGACATCGTGAAATTGATCGAAAAAACATGTGCAAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGGCACTCTCTTACAGTGCCGGTCGGGCTGGTGGGACGATGACCGGTGTGCTAAGTGCCGCAAATGAAAAGGCTGTTGAGCTTTTCCTTGAGGAGAGgtacgtacaaagaaaaactcaattttctgctaattataatcgtaagcaaacttaaactaaattaaaaaagaacttaacaaaacagatcttatcataggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaaa