Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTAATTGAGAGTGCCTGCTCTGTTGAGAGGGCGGAAGAAGCTTTAGACACTCTTCTGCCCATGCTTCCGAACCTTCAGTATTTTCGCTTCAATCCGAgtaagaaaatataattcattcagtctactataaccattacagtaatatacggttaattatttaaggcagaaagttatttttggttcgaaggtactaagct...

Basic information

species Physcomitrella patens
transcript PP1S69_157V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S69_157V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ31555 (Selaginella moellendorffii), 5'ss of exon 13
GTACTAATTGAGAGTGCCTGCTCTGTTGAGAGGGCGGAAGAAGCTTTAGACACTCTTCTGCCCATGCTTCCGAACCTTCAGTATTTTCGCTTCAATCCGAgtaagaaaatataattcattcagtctactataaccattacagtaatatacggttaattatttaaggcagaaagttatttttggttcgaaggtactaagct
||  | || ||||||||||||||||| ||| |||  |||||||| || ||||| ||||||||  |||||||  | |||||||||| ||| || ||||| ||| || |  ||| |   |     ||| ||   ||   | |     | | | |                                                
GTTTTGATCGAGAGTGCCTGCTCTGTCGAGCGGGTAGAAGAAGCCTTGGACACGCTTCTGCCTTTGCTTCCCGATCTTCAGTATTATCGTTTTAATCCTAgttagtatttatga---aaaggctcttctcgtactcatgcttgcttttccag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100390226|gb|BY952634.1|BY952634
EST:     CACTCTTCTGCCCATGCTTCCGAACCTTCAGTATTTTCGCTTCAATCCGA                         TTGACGATAGGTGTGACATGGAGCTTGATGAGACGGATGCTGCTGTGTGGT
genomic: CACTCTTCTGCCCATGCTTCCGAACCTTCAGTATTTTCGCTTCAATCCGAgtaagaaaat ... tttggtgcagTTGACGATAGGTGTGACATGGAGCTTGATGAGACGGATGCTGCTGTGTGGT
EST: gi|162256442|gb|FC432473.1|FC432473
EST:     CACTCTTCTGCCCATGCTTCCGAACCTTCAGTATTTTCGCTTCAATCCGA                         TTGACGATAGGTGTGACATGGAGCTTGATGAGACGGATGCTGCTGTGTGGT
genomic: CACTCTTCTGCCCATGCTTCCGAACCTTCAGTATTTTCGCTTCAATCCGAgtaagaaaat ... tttggtgcagTTGACGATAGGTGTGACATGGAGCTTGATGAGACGGATGCTGCTGTGTGGT