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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAGGCGATGGTGGTCGTGCTGCAATTCAAACGCAAGGCTCTGTTAGCAATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccgtcattgtgctgaatgcttctattagcaatctcttcattctttgttgtgtgaacagttgagtttcgaaattatattctgttcttcgaaatg...

Basic information

species Physcomitrella patens
transcript PP1S58_197V6.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S58_197V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ29519 (Selaginella moellendorffii), 5'ss of exon 12
ACTAGGCGATGGTGGTCGTGCTGCAATTCAAACGCAAGGCTCTGTTAGCAATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccgtcattgtgctgaatgcttctattagcaatctcttcattctttgttgtgtgaacagttgagtttcgaaattatattctgttcttcgaaatg
  | || || |  || || || || ||||||||||||||||| ||||||||||| ||||| ||||| || || |||||||| || ||||||||  | || ||||  |       | | |  ||  ||    || | | ||  |   || ||| || | |      |||  | | | |                       
CTTGGGAGACGCCGGCCGAGCAGCCATTCAAACGCAAGGCTCGGTTAGCAATCCGTTCGGGCCAACCTTCGTCTATGGCTACCGAAACATCGCATTTGAAgtaacca-------tattcccaagtctctctttggaactcagtgtgtttttttttttct------ttgtttcttgtag----------------------

upper sequence: PP1S58_197V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ28090 (Selaginella moellendorffii), 5'ss of exon 12
ACTAGGCGATGGTGGTCGTGCTGCAATTCAAACGCAAGGCTCTGTTAGCAATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccgtcattgtgctgaatgcttctattagcaatctcttcattctttgttgtgtgaacagttgagtttcgaaattatattctgttcttcgaaatg
  | || || |  || || || || ||||||||||||||||| ||||||||||| ||||| ||||| || || |||||||| || ||||||||  | || ||||  |       | | |  ||  ||    || | | || ||   || |||  |   |      |||  | | |                         
CTTGGGAGACGCCGGCCGAGCAGCCATTCAAACGCAAGGCTCGGTTAGCAATCCGTTCGGGCCAACCTTCGTCTATGGCTACCGAAACATCGCATTTGAAgtaacca-------tattcccaagtctctctttggaactcactatgtttttttcttctttgtttcttgtatgtag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67701566|gb|BJ961799.1|BJ961799
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|208382909|gb|DC928334.1|DC928334
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|67726513|gb|BJ976772.1|BJ976772
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|37823222|gb|BJ581288.1|BJ581288
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|37836886|gb|BJ594894.1|BJ594894
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|208370963|gb|DC944338.1|DC944338
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|162176258|gb|FC352715.1|FC352715
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|18337725|gb|BJ169749.1|BJ169749
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|37842901|gb|BJ600909.1|BJ600909
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|162155578|gb|FC331529.1|FC331529
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
EST: gi|37821349|gb|BJ579415.1|BJ579415
EST:     ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAG                         GTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG
genomic: ATCCATTCGGTCCAACGTTTGTGTATGGCTATCGCAACATCGCTCTGGAGgtaattaccg ... gacttcacagGTAATGAAGAATGGGCATATTGCAACTGTGACTCTCTTCCAGAGCACCATG