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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatctggtttccttacgttattcgatttttttgccagttattgaggaacttgaaatactgcgaattgtctgatttcttatagtttgttatttgat...

Basic information

species Physcomitrella patens
transcript PP1S41_177V6.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162249296|gb|FC423979.1|FC423979
EST:     ACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: ACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|37825115|gb|BJ583181.1|BJ583181
EST:     TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|162192524|gb|FC368634.1|FC368634
EST:     TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|162263738|gb|FC439637.1|FC439637
EST:     CTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: CTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|162278733|gb|FC454843.1|FC454843
EST:     TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|18334344|gb|BJ166361.1|BJ166361
EST:     TTGCATCAAAACGGAAGCTGNAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|162230101|gb|FC406249.1|FC406249
EST:     TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|162278732|gb|FC454842.1|FC454842
EST:     TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|162214450|gb|FC391209.1|FC391209
EST:     TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|67692630|gb|BJ952863.1|BJ952863
EST:     TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
EST: gi|208397350|gb|DC916318.1|DC916318
EST:     TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACG                         GTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA
genomic: TTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatct ... tgctattcagGTGACGACAGAGCGGATGTTAGATCATGTAAAGAATCTATTGGCTATCCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAACGGAAGCTGGAGGACCTTACTGTTGGCCCTGTTCTAACGgtgcgaatctggtttccttacgttattcgatttttttgccagttattgaggaacttgaaatactgcgaattgtctgatttcttatagtttgttatttgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA