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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATATCGAGCTCCTGAAGTTATTCTTGGCCTTCCTTATGATCAGAAGATCGACATGTGGTCATTGGGCTGCATTCTTGCAGAACTCTGTTCAGGAAATgtaagaacctgcccgtgtgctttgtccatgctttgtagttgcctgaaaatgtgtgaaagctctttcctttggtgggcatacacgtttagaggtcggtttg...

Basic information

species Physcomitrella patens
transcript PP1S381_39V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S381_39V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ25132 (Selaginella moellendorffii), 5'ss of exon 3
CTCATATCGAGCTCCTGAAGTTATTCTTGGCCTTCCTTATGATCAGAAGATCGACATGTGGTCATTGGGCTGCATTCTTGCAGAACTCTGTTCAGGAAATgtaagaacctgcccgtgtgctttgtccatgctttgtagttgcctgaaaatgtgtgaaagctctttcctttggtgggcatacacgtttagaggtcggtttg
 || |||||||| || |||||||| || |||||||| || || |||||||| ||||| |||||  |||| || ||||| || || || || ||||||||||| || |  ||      ||||    ||||||  ||     |   |     |||||    |                                        
ATCTTATCGAGCGCCAGAAGTTATACTGGGCCTTCCCTACGACCAGAAGATTGACATTTGGTCCCTGGGGTGTATTCTAGCGGAGCTTTGCTCAGGAAATgtgagtatttgt---gatgctgaaaccatgccatgctaacgttcgttctcgtgtgtttacag--------------------------------------

upper sequence: PP1S381_39V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 3
CTCATATCGAGCTCCTGAAGTTATTCTTGGCCTTCCTTATGATCAGAAGATCGACATGTGGTCATTGGGCTGCATTCTTGCAGAACTCTGTTCAGGAAATgtaagaacctgcccgtgtgctttgtccatgctttgtagttgcctgaaaatgtgtgaaagctctttcctttggtgggcatacacgtttagaggtcggtttg
 || |||||||| || |||||||| || |||||||| || || |||||||| ||||| |||||  |||| || ||||| || || || || ||||||||||| || |  ||      | |||   ||||||  ||     |   |     |||||    |                                        
ATCTTATCGAGCGCCAGAAGTTATACTGGGCCTTCCCTACGACCAGAAGATTGACATTTGGTCCCTGGGGTGTATTCTAGCGGAGCTTTGCTCAGGAAATgtgagtatttgt---gatacttgaaccatgccatgctaacgttcgttctcgtgtgtttacag--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162271795|gb|FC448928.1|FC448928
EST:     TCGACATGTGGTCATTGGGCTGCATTCTTGCAGAACTCTGTTCAGGAAAT                         GTGCTTTTCCAAAACGATTCCCTGGCAACGTTATTGGCCCGGGTGGTAGGA
genomic: TCGACATGTGGTCATTGGGCTGCATTCTTGCAGAACTCTGTTCAGGAAATgtaagaacct ... gcatgtgtagGTGCTTTTCCAAAACGATTCCCTGGCAACGTTATTGGCCCGGGTGGTAGGA
EST: gi|162242877|gb|FC415307.1|FC415307
EST:     TCGACATGTGGTCATTGGGCTGCATTCTTGCAGAACTCTGTTCAGGAAAT                         GTGCTTTTCCAAAACGATTCCCTGGCAACGTTATTGGCCCGGGTGGTAGGA
genomic: TCGACATGTGGTCATTGGGCTGCATTCTTGCAGAACTCTGTTCAGGAAATgtaagaacct ... gcatgtgtagGTGCTTTTCCAAAACGATTCCCTGGCAACGTTATTGGCCCGGGTGGTAGGA