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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttgtacttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcag

Basic information

species Physcomitrella patens
transcript PP1S364_50V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 10
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttgtacttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcag
|||| | || || ||||||||||| |||||||| || || || || || |||||| | || || ||||| || ||||| ||||||||||| ||||||||||||| |||   | ||  | |  |     || ||   | |   | ||   | |   | |   || |    |||             
ACTGAGAGATATCATGCAATTTGGGAGCAGCAATACCGCTGTTTTCTTTAAAATGAGAGTCGCTGGTGTTCTTCATATCTTTCAGTTTGAAACTAAGCAGgttagttttaaatctctaccaggaa--ataattcatactatgtgtaggctgtgaaataaccatctgatatttag-----------

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: GRMZM2G070273_T01 (Zea mays), 5'ss of exon 10
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacct--agatcttgctttgtactt--gcaaatccc--tatattattttggagatttatttttggtttgtcttgtgagcag
|||  | ||||| |||||||||||||||||||| || || ||||| || |||||||| || || ||||| || ||||| ||||| ||||| || |||||||| ||| |    | |  ||    |  ||| || |   ||  ||||   ||||| ||         |||   |     || ||| | ||   
ACTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTCTTCTTTAAAATGCGGGTTGCTGGTGTTCTTCATATCTTTCAATTTGAAACAAAGCAGgt-attctaaagcttcgaggcaatagtttataatacagccgatcctgttatatcatccatagctgttagaataacgatgactttttag---

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 10
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgt-tattttcgtacctagatcttgctttgtactt--gcaaatccc--tatattattttggagatttatttttggtttgtcttgtgagcag
| |  | ||||| |||||||||||||||||||| || || || || || |||||||| || || ||||| || ||||| ||||| ||||| || |||||||| |  |   ||  | ||    |  ||  || |    |  ||||   ||||| || |   |    ||   |     ||| || |      
ATTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTTTTCTTTAAAATGCGAGTTGCTGGTGTCCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagtttcgaggcaatagttcataatgcatctgatcctgttatatcatctataactgatagaataaccatgttttttag----

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttg---tacttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcag
  || | ||||| ||||||||||| |||||||| || || |||||||| |||||||| || || ||||| || || || || |||||||| || ||||||||    | | |   | ||| ||||       | |||   |||   | | | |   |||   ||||| | | | ||||           
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgttgcacaaactttctttggaattattttgtcacactggtattttatctcttggttgtag---------

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 12
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttgtacttgcaaatcccta-tattattttggagatttatttttggtttgtcttgtgagcag-------------------------------------
  || | ||||| ||||||||||| |||||||| || || || ||||| |||||||| || || ||||| || || || ||||||||||| || |||||||| |||  | | |  ||       | |   ||  ||| | | || | |     |   || |||||  |   ||   |  |  | ||                                     
GTTGAGGGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGTGTTCTTCACATATTTCAGTTTGAAACAAAGCAGgt-attagcatgctcagggac-attctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaag

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 12
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttgtacttgcaaatccctatatta---ttttgga---gatttatttttggtttgtcttgtgagcag---------------------------------
| || | ||||| ||||||||||| |||||||| || || || ||||| |||||||| || || ||||| || || || || |||||||| || |||||||| |||  | |    ||      || |   ||| | | | | ||  ||     ||||||   || | || | |   ||   |||     |                                  
ATTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGGGTTGCAGGTGTTCTTCACATATTCCAGTTTGAAACAAAGCAGgt-attggcatgttcagggac-actgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaag

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: AT5G65930.1 (Arabidopsis thaliana), 5'ss of exon 9
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgtt-----attttcgtacctagatc-ttgctttgtacttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcag
||| || ||||| ||||||||||| ||||| ||||| || ||||||||||||||| | || || ||||| || || || |||||||| ||||| || ||||||     ||     |   | |||| ||   || |    |||| ||| |||   || ||  |  |   |   | || ||| ||||      
ACTACGTGACATCATGCAATTTGGCAGCAGTAACACTGCTGTCTTTTTCAAAATGAGAGTCGCTGGTGTTCTTCACATATTTCAGTTCGAGACAAAACAGgtttaaacatcactatttgtggatcattatattatgaa-gcaattccttatgagatattcaatttgggtaacttgtatgt-ttgtag----

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ30174 (Selaginella moellendorffii), 5'ss of exon 11
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttgtacttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcag
 ||| | ||||| ||||||||||| || ||||| || || || ||||| ||||||||||| ||||| ||  |||| |||||||||||||| ||||| |||||  | || ||  ||    | ||   |     |  ||||  || |   |                                    
GCTGAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgt-gtctttgtggcttt-ccgtgtagttcttctctaaatttctgtcgcag-----------------------------------

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ06058 (Selaginella moellendorffii), 5'ss of exon 11
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttgtacttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcag
 ||  | ||||| ||||||||||| || ||||| || || || ||||| ||||||||||| ||||| ||  |||| |||||||||||||| ||||| |||||  |||| ||  ||    | ||   |     |  ||||  || |   |                                    
GCTTAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgt-gtttttgtggcttt-ccgtgtagttcttctctaaatttctgtcgcag-----------------------------------