Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAGCTGAGGACAATATCAAAAGCATCCGTTCCTATGTCACGGAATTGAAAGAGCGTGTGGCGAAACTTCAATACCAGAAACAGCTACTTGTCTGTCAGgtaagtacaaggattgttcgtatatcaagccacttctgacgcatacttctggtcgcaaatctatacctgctgttcagggctatccccagaagttggagcctcaatgcgctcagtccgttgtgatgtctcacttccaatctctcattgcttcttgatacttgcaatag

Basic information

species Physcomitrella patens
transcript PP1S343_28V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S343_28V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: LOC_Os01g33040.1 (Oryza sativa), 5'ss of exon 13
CGCAGCTGAGGACAATATCAAAAGCATCCGTTCCTATGTCACGGAATTGAAAGAGCGTGTGGCGAAACTTCAATACCAGAAACAGCTACTTGTCTGTCAGgtaagtacaaggattgttcgtatatcaagccacttctgacgcatacttctggtcgcaaatctatacctgctgttcagggctatccccagaagttggagcctcaatgcgctcagtccgttgtgatgtctcacttccaatctctcattgcttcttgatacttgcaatag
 || |||||||| ||| | | ||  |||||  | |||||||| ||| |||| ||| | || || |||||||||||||| || ||||| |||||||||||||| |       ||| |||  | |  ||   ||| |  |     | | |      |  | | | |  |  |   | |    | |   |     ||| |  || | | |                                                            
TGCTGCTGAGGAGAATGTTAGAAATATCCGGGCTTATGTCACTGAACTGAAGGAGAGAGTTGCAAAACTTCAATACCAAAAGCAGCTGCTTGTCTGTCAGgttat------gatcgtttatcttgca---cacataagttttgttcatgcaaaggttactttgtttc-accactaaaatatgttttc-----ttgtaatcttactacag----------------------------------------------------------

upper sequence: PP1S343_28V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: Vv17s0000g03290.t01 (Vitis vinifera), 5'ss of exon 12
CGCAGCTGAGGACAATATCAAAAGCATCCGTTCCTATGTCACGGAATTGAAAGAGCGTGTGGCGAAACTTCAATACCAGAAACAGCTACTTGTCTGTCAGgtaagtacaaggattgttcgtatatcaagccacttctgacgcatacttctggtcgcaaatctatacctgctg--ttcagggctatccccagaagttggagcctcaatgcgctcagtccgttgtgatgtctcacttccaatctctcattgcttcttgatacttgcaatag
 ||||| ||||| ||| | | || |||  |  | ||||| |||||||||||||| |||||||| || || |||||||| || ||||||||||| || ||||||   | |  || |       |||||      || |      |   | ||   |||  || ||      ||  | ||       |     |  ||||   ||   |    |  |  | |||| ||| | |                                      
TGCAGCAGAGGAGAATGTGAGAAACATAAGAGCATATGTGACGGAATTGAAAGAACGTGTGGCCAAGCTACAATACCAAAAGCAGCTACTTGTTTGCCAGgtaga-atagcgacttccttcctatcagatggtttatat----tttctttgaaggcatttccattttaaatgcatccaacttcgacttacaatcttgggaactttgtttcttttgcac-ttgttatggcaccag-----------------------------------