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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTACCACTCTCCACCATCACCAATTGGGCCAAAGAATTTCGGAAGTGGTTACCTGATATGAATGTAGTTGTTTATGTGGGCAACCGAGCTAGTCGAGAGgtaagcgtcttagatttgcagtttattttattctttttatttttctttattttaaatcaatttttgtccttttgcaactttgatacgaatgtttggctca...

Basic information

species Physcomitrella patens
transcript PP1S317_10V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: GRMZM2G141258_T01 (Zea mays), 5'ss of exon 12
TGTACCACTCTCCACCATCACCAATTGGGCCAAAGAATTTCGGAAGTGGTTACCTGATATGAATGTAGTTGTTTATGTGGGCAACCGAGCTAGTCGAGAGgtaagcgtcttagatttgcagtttattttattctttttatttttctttattttaaatcaatttttgtccttttgcaactttgatacgaatgtttggctca--------
 || ||||| || ||  |  | || ||||| || ||||||||||||||| | ||  | |||||||| ||||||||||| |||||||| || ||  ||||||||    | | | |||   |  | | ||  | | | |  ||||  | | |  || | |     |||||   |     |    | | ||||  | | || |        
CGTGCCACTGTCAACATTGTCGAACTGGGCAAAGGAATTTCGGAAGTGGCTGCCCAACATGAATGTTGTTGTTTATGTTGGCAACCGTGCCAGCAGAGAGgta----tataaaattattaaatcagttc-tccatctgtttttcgtatgtgatatagctgccattgtcaaatgttggc---aacaagaattatcgactaaaacagtat

upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 12
TGTACCACTCTCCACCATCACCAATTGGGCCAAAGAATTTCGGAAGTGGTTACCTGATATGAATGTAGTTGTTTATGTGGGCAACCGAGCTAGTCGAGAGgtaag-cgtct---tagatttgcagtttattttattctttttatttttctttattttaaatcaatttttgtccttttgcaactttgatacgaatgtttggctca
||| ||| | |||||  |  | |||||||||||||||||  |||||||| | |||||||||||| |  |  | ||||| || |  || || ||||||||||| || | | |   | || ||   | ||| | | |   |   |   |    | | | | ||  ||     |  ||  |||||||| ||    ||   | |   |
TGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTAGGTACTCGTGCAAGTCGAGAGgtgagacatttctcttgagtttttggttaatgtgtaaatgaaaggataaaatctgtcagatatataac-atatttcagcaacttttattttcat---tagaata

upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 12
TGTACCACTCTCCACCATCACCAATTGGGCCAAAGAATTTCGGAAGTGGTTACCTGATATGAATGTAGTTGTTTATGTGGGCAACCGAGCTAGTCGAGAGgtaag-cgtcttagatttgcagtttattttattctttttatttttcttta--ttttaaat----caatttttgtccttttgcaactttgatacgaatgtttggctca
||| ||| | |||||  |  | |||||||||||||||||  |||||||| | |||||||||||| |  |  | ||||| || |  || || ||||||||||| || | | |  || ||    ||||  ||||  ||| |   ||| || |  | ||  ||    |||  |||||| || |     ||    ||   |          
TGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCAAGTCGAGAGgtgagacatttctgagtttgtctttaagttatgatttatgaattttttcaagtcttccatgcttcaaactttgtctttctagcgtttaatcaccttttcc-------