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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACGACAAGCGAGTCAATGCTACTTACATCATCAGTATTGCACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatctgtggctgaatcggtatctagcataaggttttctaaactcaaaggatttgtatggatgacattcaccctcacctttcagagttgctaatgt...

Basic information

species Physcomitrella patens
transcript PP1S314_45V6.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698774|gb|BJ959007.1|BJ959007
EST:     CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG                         GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
EST: gi|67575311|gb|BJ948135.1|BJ948135
EST:     CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG                         GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
EST: gi|162153969|gb|FC329476.1|FC329476
EST:     CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG                         GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
EST: gi|162163595|gb|FC339505.1|FC339505
EST:     CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG                         GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
EST: gi|162177167|gb|FC352596.1|FC352596
EST:     CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG                         GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT