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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACATGAGAGCCACGCAAAGTGAGCTAGATATGTCGTATCATCAACGGTACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcctctaccttattgtctcattgcttttaggagaatgattcttcatcgctgccgtacttcccttgttttttggctggctgtacctttgtatggattagaaacgtgttgggtgattaaatgttgattaaatatgtttatgttttatcatgcgcag

Basic information

species Physcomitrella patens
transcript PP1S192_39V6.5
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162173094|gb|FC349200.1|FC349200
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|162279045|gb|FC455072.1|FC455072
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|37842189|gb|BJ600197.1|BJ600197
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|37841660|gb|BJ599668.1|BJ599668
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|37843663|gb|BJ601671.1|BJ601671
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|37850762|gb|BJ608770.1|BJ608770
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTCCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|208381262|gb|DC919152.1|DC919152
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|7584227|gb|AW700124.1|AW700124
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|37821380|gb|BJ579446.1|BJ579446
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|37851014|gb|BJ609022.1|BJ609022
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|162227769|gb|FC402697.1|FC402697
EST:     GAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: GAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
EST: gi|37850441|gb|BJ608449.1|BJ608449
EST:     TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATAC                         TATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG
genomic: TACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcct ... tcatgcgcagTATTCGTGGGGATCAACAACATTTTGTGCGAAGGGATGAATTGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGACATGAGAGCCACGCAAAGTGAGCTAGATATGTCGTATCATCAACGGTACCAAGATATTGTTATTCCTGAAGCTTATGAGCGTCTAATACTTGATACgtaactgcctctaccttattgtctcattgcttttaggagaatgattcttcatcgctgccgtacttcccttgttttttggctggctgtacctttgtatggattagaaacgtgttgggtgattaaatgttgattaaatatgtttatgttttatcatgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC