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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAAgtaagtgtctgtttaaagcatgcttgcatcgtttacatcgaagctgcatgaaagttgagctgagtcgtattgcttcgcaacaatcgctttcttatattttagtaacaggaaaggaattaatattaatcgagttcttacgtttaaatcactctgatatatgtttacag

Basic information

species Physcomitrella patens
transcript PP1S173_136V6.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195982|gb|FC372166.1|FC372166
EST:     TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
EST: gi|162195983|gb|FC372167.1|FC372167
EST:     TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
EST: gi|37834281|gb|BJ592293.1|BJ592293
EST:     ATAAGGAAATAGAGGNCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: ATAAGGAAATAGAGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
EST: gi|18341657|gb|BJ173692.1|BJ173692
EST:     AGGGCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: AGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
EST: gi|162241844|gb|FC418099.1|FC418099
EST:     TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAAgtaagtgtctgtttaaagcatgcttgcatcgtttacatcgaagctgcatgaaagttgagctgagtcgtattgcttcgcaacaatcgctttcttatattttagtaacaggaaaggaattaatattaatcgagttcttacgtttaaatcactctgatatatgtttacag

- - - - - - - - - - - - - AAGGAA