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TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgtctgatctttgtgtttgtagaaattttctatggttaacaaagtgcatttgcgtcaatcttttgcaatagacttggtaatacttctttacag...
species | Physcomitrella patens |
transcript | PP1S159_2V6.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|162279998|gb|FC456184.1|FC456184
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|162255997|gb|FC431761.1|FC431761
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|208346091|gb|DC917044.1|DC917044
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|208386288|gb|DC953001.1|DC953001
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|37836145|gb|BJ594153.1|BJ594153
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|67693400|gb|BJ953633.1|BJ953633
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|162174015|gb|FC350530.1|FC350530
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACCAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|67700691|gb|BJ960924.1|BJ960924
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|162194113|gb|FC370288.1|FC370288
genomic: TTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|37832920|gb|BJ590932.1|BJ590932
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|162164026|gb|FC339925.1|FC339925
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|162279999|gb|FC456185.1|FC456185
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGAEST: gi|67727775|gb|BJ978034.1|BJ978034
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
EST: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAG GTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
genomic: TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgt ... aaatatgcagGTTATGGACGTTTTTAACAAGATTTCCGAGTTATTTCCTGGTATGAATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCAACAAATCCATTGAATATTACTAAGTATCAGAATGACAAGGAGgtatgcatgtctgatctttgtgtttgtagaaattttctatggttaacaaagtgcatttgcgtcaatcttttgcaatagacttggtaatacttctttacag
- - - - - - - - - - - - - - - - - - - - - AAGGAG