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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGATGGGTACACATCAGCATCTTTTCATCCTGATGGCCTTATCCTCGGGACTGGAACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAGgtctgtatatactccctttccggtttttttgctattagtacacaattactatttgacattgatgttcaatttccactgaagatattcatatctgatcacttgtgccgtgggattaacgccaacttgaaattcag

Basic information

species Physcomitrella patens
transcript PP1S14_250V6.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S14_250V6.2 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ31494 (Selaginella moellendorffii), 5'ss of exon 13
GCAAGATGGGTACACATCAGCATCTTTTCATCCTGATGGCCTTATCCTCGGGACTGGAACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAGgtctgtatatactccctttccggtttttttgctattagtacacaattactatttgacattgatgttcaatttccactgaagatattcatatctgatcacttgtgccgtgggattaacgccaacttgaaattcag
          || ||| | || || || |||||||||||| | ||||| || ||||||||| | |||||  |||||||||||||||| ||||| || ||||       |  |||  |||  ||  | | |  | |  |  |  ||  | | | |    |   | | ||                                                                  
---------ATATACAGCCGCTTCCTTCCATCCTGATGGCTTAATCCTTGGCACTGGAACTGCGGAATCGTTGGTTCGCATTTGGGACGTGAAGTCACAGGC------AAGCTCTgtttttggagtctgttgtttcgggccttaac-attttctttgttccttatccag-----------------------------------------------------------------

upper sequence: PP1S14_250V6.2 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EFJ38655 (Selaginella moellendorffii), 5'ss of exon 13
GCAAGATGGGTACACATCAGCATCTTTTCATCCTGATGGCCTTATCCTCGGGACTGGAACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAGgtctgtatatactccctttccggtttttttgctattagtacacaattactatttgacattgatgttcaatttccactgaagatattcatatctgatcacttgtgccgtgggattaacgccaacttgaaattcag
 |||||||| || ||| | || || || |||||||||||| | ||||| || ||||||||| | |||||  |||||||||||||||| ||||| || ||||     |    ||  |||||  |||| || | |    |     |  |  | ||||    |  | | ||                                                                  
ACAAGATGGATATACAGCCGCTTCCTTCCATCCTGATGGCTTAATCCTTGGCACTGGAACTGCGGAATCGTTGGTTCGCATTTGGGACGTGAAGTCACAGgc----aagctctttctttcgagtttgtt-gtttcgggccttaacattttctttgttcct--tatccag-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67725231|gb|BJ975490.1|BJ975490
EST:     ACTACTGNATCACTGG-TCGCATTTGGGATGTGAAATCTCAG                         GCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
genomic: ACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAGgtctgtatat ... tgaaattcagGCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
EST: gi|162238755|gb|FC419053.1|FC419053
EST:     GGACTGGAACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAG                         GCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
genomic: GGACTGGAACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAGgtctgtatat ... tgaaattcagGCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
EST: gi|6102231|gb|AW126701.1|AW126701
EST:     TGAAAT-TCAG                         GCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
genomic: TGAAATCTCAGgtctgtatat ... tgaaattcagGCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
EST: gi|19787424|gb|BQ040623.1|BQ040623
EST:     TGAAAT-TCAG                         GCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
genomic: TGAAATCTCAGgtctgtatat ... tgaaattcagGCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
EST: gi|100381276|gb|BY950059.1|BY950059
EST:     GGACTGGAACTACTGAATCACTGGTTCGCATTTTGGATGTGAAATCTCAG                         GCAAATGTTGCCAAGTT
genomic: GGACTGGAACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAGgtctgtatat ... tgaaattcagGCAAATGTTGCCAAGTT
EST: gi|162182529|gb|FC357504.1|FC357504
EST:     GGACTGGAACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAG                         GCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT
genomic: GGACTGGAACTACTGAATCACTGGTTCGCATTTGGGATGTGAAATCTCAGgtctgtatat ... tgaaattcagGCAAATGTTGCCAAGTTTGAAGGGCACACAGGACCCGTGACGGATATATCT