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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGACAAGCGATCGAAACTACCTGGGTGGATTTTGTCACATTTACGAGAGGCTCACCTCAACCTCAGTACAGACATGTCTGTCCATATTGCACGAGAGgtactgtaggtccatggtcgtgtcttgatggcagctgttttgcattagttcggcatctactgtaattgaacgcttttaccccggctttcaaagtgcttag...

Basic information

species Physcomitrella patens
transcript PP1S145_26V6.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S145_26V6.2 (Physcomitrella patens), 5'ss of exon 13
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 11
GCACGACAAGCGATCGAAACTACCTGGGTGGATTTTGTCACATTTACGAGAGGCTCACCTCAACCTCAGTACAGACATGTCTGTCCATATTGCACGAGAGgta---ctgtaggtccatggtcgtg-tcttgatggcagctgttttgcattagttcgg--catctactgtaattgaacgcttttaccccggctttcaaagtgcttag-
 || || || || || ||| | |||||||||||| ||||||||||||| || || ||||| ||  | || || |||||| || | ||||||||||||||||||   || |   | | ||  |    |||||||   |      ||| |  |  |  |   ||||     | ||||| |  |       || |    | | || |   
TCATGATAAACGCTCTAAATTGCCTGGGTGGATTCTGTCACATTTACGTGATGCACACCTGAATTTGAGCACTGACATGGCTTTGCATATTGCACGAGAGgtatgtctcttattgcgtgtccacaatcttgatattattgaccttggaaaacatgagataatctgtcagacttgaaagtat-------ggttcaataggagcatgtc