Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGCCATTGGTTTCAAGTTGGACAGCCTTCTTAAGCTTACTGATACTCGTGCTCGGAACAATAGAATGACTCTCATGCACTATTTGTGCAAGgtgatctatatttcatccactgtttgcagatatcgaaggatgacattattcaatctcttaattttggaaatgcttttctttttctcaaatgcgatacgctcctgaacttattccttattttgtgctgctcacgtttaattatttgtggattatgtag

Basic information

species Physcomitrella patens
transcript PP1S13_282V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S13_282V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: LOC_Os02g55150.2 (Oryza sativa), 5'ss of exon 6
GCTCTGCCATTGGTTTCAAGTTGGACAGCCTTCTTAAGCTTACTGATACTCGTGCTCGGAACAATAGAATGACTCTCATGCACTATTTGTGCAAGgt--gatctatatttcatccactgtttgcagatatcgaaggatga--cattattcaatctcttaattttggaaatgcttttcttttt-ctcaaatgcgatacgctcctgaacttattccttattttgtgctgctcacgtttaattatttgtggattatgtag
| || ||  |||| || |  ||||| ||||||||||| || | ||||| ||| || || || ||||| |||||||||||||| ||||| ||||||||  |   | || ||     | |     |   | | |     |||    | | | || | | || || || ||    |  || |||| |   |||    |                                                              
GGTCGGCTGTTGGATTTAGATTGGATAGCCTTCTTAAACTCATTGATATTCGGGCACGTAATAATAGGATGACTCTCATGCATTATTTATGCAAGgtatggcatttaatttcagtaatcccatcgttttttgtgttttgaagtgtcactgaaccacatagttatgaaagcattgctcgttttgcgggaatttact--------------------------------------------------------------

upper sequence: PP1S13_282V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 13
GCTCTGCCATTGGTTTCAAGTTGGACAGCCTTCTTAAGCTTACTGATACTCGTGCTCGGAACAATAGAATGACTCTCATGCACTATTTGTGCAAGgtgatctatatttcatccactgtttgcagatatcgaaggatgacattattcaatctcttaattttggaaatgcttttctttttctcaaatgcgatacgctcctgaacttattccttattttgtgctgctcacgtttaattatttgtggattatgtag
|  ||||||| || |||||||||||||||||||||||  |  |||||||||||||  | ||||| | ||||||| | ||||| || ||||| |||||    | |  |  | ||     ||          || |   | |||| |   | | |  ||| ||   ||  || ||     ||||||     || ||   |  | || |||||                                          
GAGCTGCCATAGGATTCAAGTTGGACAGCCTTCTTAAATTGGCTGATACTCGTGCAAGAAACAACAAAATGACTTTAATGCATTACTTGTGTAAGgtaggttgt--tgaaaccttcacttc---------aaagtccaaattaatttttatttgcattatgatcatagttgtcaa---ctcaaaaatttta-gcatgtataatt-ttccta-----------------------------------------