1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCTGCGTATGAGAAAATTGGAGTAGTGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccacttagcgcattttgtgtagcgccgtcgctttgcttggattatgtcttttgatcttgatgaccttaccgcaacttgaattcaacatgaggaac...
species | Physcomitrella patens |
transcript | PP1S129_53V6.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|37844061|gb|BJ602069.1|BJ602069
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|162268144|gb|FC443822.1|FC443822
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAA-TCAG GGCGAAACA-CTGGAGGA-GGGCCCCATGGGAAGGAEST: gi|162268143|gb|FC443821.1|FC443821
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|37841807|gb|BJ599815.1|BJ599815
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|37849671|gb|BJ607679.1|BJ607679
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|162198683|gb|FC373464.1|FC373464
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|162167515|gb|FC343699.1|FC343699
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|162165626|gb|FC341465.1|FC341465
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|208371453|gb|DC955789.1|DC955789
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGGGGAAGGGCCCCATGGGAAGGAEST: gi|162165627|gb|FC341466.1|FC341466
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|37827443|gb|BJ585455.1|BJ585455
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGAEST: gi|162198682|gb|FC373463.1|FC373463
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
EST: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAG GGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
genomic: TGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccact ... ctgttcacagGGCGAAGCAACTGGAGGAAGGGCCCCATGGGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCGTATGAGAAAATTGGAGTAGTGGATGAACAGTGGATTATACATGTTGGTGTGCCGTCGCTCGGAAATCAGgtagcccacttagcgcattttgtgtagcgccgtcgctttgcttggattatgtcttttgatcttgatgaccttaccgcaacttgaattcaacatgaggaac
- - - - - - - - - - - - - - - - - AGTGGA