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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTCTGGCGAGATTCTGGGTGTTCACATTCTTGGCCTCCACGCCGCCGACCTCATCCACGAAGCCTCCAACGCTATTGCTATGGGCAACACCATCAAAgtgagtgccaagtttcattttactagaattgtctgccgaaccttgacgtctaatggatgtgatgatgtagttgtcaagtctcgctatcgaatgctgcgatttcttctaacaacccattgctctgtctttgacag

Basic information

species Physcomitrella patens
transcript PP1S112_186V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S112_186V6.1 (Physcomitrella patens), 5'ss of exon 13
lower sequence: EDP09658 (Chlamydomonas reinhardtii), 5'ss of exon 9
TGACTCTGGCGAGATTCTGGGTGTTCACATTCTTGGCCTCCACGCCGCCGACCTCATCCACGAAGCCTCCAACGCTATTGCTAT-GGGCAACACCATCAAA-
 ||| | |||||||| ||||| || |||||  | ||||| |||||||| |||||||||||||| ||||||||||| || || |  ||||| | |   ||   | ||| |  |||      |    ||||   |   |  | |  |    | | ||    |      |      ||  |     ||     ||  || | | |                                  
GGACACGGGCGAGATCCTGGGCGTGCACATCATCGGCCTGCACGCCGCGGACCTCATCCACGAGGCCTCCAACGCCATCGCCACCGGGCAGCGCGTGCAGgtgcgagggtgaagagggggtggggtagagggggtggttgtagataccagcccaa--actaaaccaaacccaatgcaagagagcgaggaggagagc-gtggtc---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208366234|gb|DC943808.1|DC943808
EST:     ACCTCATCCACGAAGCCTCCAACGCTATTGCTATGGGCAACACCATCAAA                         GACATCAAATTTGCTGTGCATGCCCATCCGACCTTGTCTGAAGTGTTGGAC
genomic: ACCTCATCCACGAAGCCTCCAACGCTATTGCTATGGGCAACACCATCAAAgtgagtgcca ... tctttgacagGACATCAAATTTGCTGTGCATGCCCATCCGACCTTGTCTGAAGTGTTGGAC