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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCTGTTCAGTGCCTGGGCATGTGCTGCTGTGGGCCGAACAGCTCAAGAAGTTGTCAGTGAAGTCCGCAGGCAGTTTTCTGAGCGGCCTGGTATCATGgtaaggattcacgagtttacaaatgcctcttccagtgcacttcagttgtaatgcttaggaacttaaggttggatattttctttaaaatggtcttttgaatattaacattggtagtagtactattaacggtatcaatctttttgtactgatagcaaatctggtgcgacttgtag

Basic information

species Physcomitrella patens
transcript PP1S105_42V6.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S105_42V6.2 (Physcomitrella patens), 5'ss of exon 13
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 12
TTATCTGTTCAGTGCCTGGGCATGTGCTGCTGTGGGCCGAACAGCTCAAGAAGTTGTCAGTGAAGTCCGCAGGCAGTTTTCTGAGCGGCCTGGTATCATGgtaaggattcacgagtttacaaatgcctcttccagtgcacttcagttgtaatgcttaggaacttaaggttggat--attttctttaaaatggtcttttgaatattaacattggtagtagtactattaacggtatcaatctttttgtactgatagcaaatctggtgcgacttgtag
||  || || ||||| ||||||||| |||| || ||||| || |||||||| ||||||| ||||||  | || ||||||  |||| |||| ||||||||||| || ||    || | |  | |    | ||   ||  |       ||||    |||     | |  | || ||  | ||  ||||| ||| |   |  |                                                                           
TTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTGCTCAAGAGGTTGTCAATGAAGTAAGAAGACAGTTTATTGAGAGGCCAGGTATCATGgtgagtat----gattctctatagcatttttatggtttatcatgaatgtaggttttaatttttaattgatgcatgaaattgttttaacatgtttgctacag--------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162189732|gb|FC366786.1|FC366786
EST:     AAGTTGTCAGTGAAGTCCGCAGGCAGTTTTCTGAGCGGCCTGGTATCATG                         ACGTACCAAGAAAAGCCAGACTATGCTCGGTGTGTATCCATCGTTGCGGCT
genomic: AAGTTGTCAGTGAAGTCCGCAGGCAGTTTTCTGAGCGGCCTGGTATCATGgtaaggattc ... cgacttgtagACGTACCAAGAAAAGCCAGACTATGCTCGGTGTGTATCCATCGTTGCGGCT
EST: gi|37842791|gb|BJ600799.1|BJ600799
EST:     CTGAGCGNCCTGGTATCATG                         ACGTACCAAGAAAAGCCAGACTATGCTCGGTGTGTATCCATCGTTGCGGCT
genomic: CTGAGCGGCCTGGTATCATGgtaaggattc ... cgacttgtagACGTACCAAGAAAAGCCAGACTATGCTCGGTGTGTATCCATCGTTGCGGCT
EST: gi|162185003|gb|FC362449.1|FC362449
EST:     AAGTTGTCAGTGAAGTCCGCAGGCAGTTTTCTGAGCGGCCTGGTATCATG                         ACGTACCAAGAAAAGCCAGACTATGCTCGGTGTGTATCCATCGTTGCGGCT
genomic: AAGTTGTCAGTGAAGTCCGCAGGCAGTTTTCTGAGCGGCCTGGTATCATGgtaaggattc ... cgacttgtagACGTACCAAGAAAAGCCAGACTATGCTCGGTGTGTATCCATCGTTGCGGCT