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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTGTTCGAGGACTATGAACGCGACAGCTACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAAgtgagtaaccttactctgcatgcatctcactacctcttttcagctcactgttgactccctttttcttttgatctggctagtactgacttgttgagtttgacccag

Basic information

species Physcomitrella patens
transcript PP1S101_225V6.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152921|gb|FC329223.1|FC329223
EST:     ACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAA                         GTGGTTTTGAAATCATTTTTGGCCAAAATCTACAAGCGCGAAAAGTAGGGT
genomic: ACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAAgtgagtaacc ... tttgacccagGTGGTTTTGAAATCATTTTTGGCCAAAATCTACAAGCGCGAAAAGTAGGGT
EST: gi|67579318|gb|BJ951449.1|BJ951449
EST:     ACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAA                         GTGGTTTTGAAATCATTTTTGGCCAAAATCTACAAGCGCGAAAAGTAGGGT
genomic: ACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAAgtgagtaacc ... tttgacccagGTGGTTTTGAAATCATTTTTGGCCAAAATCTACAAGCGCGAAAAGTAGGGT
EST: gi|208378429|gb|DC923065.1|DC923065
EST:     ACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAA                         GTGGTTTTGAAATCATTTTTGGCCAAAATCTACAAGCGCGAAAAGTAGGGT
genomic: ACGTAAAGCTTATTGCTGACATCGAAAAGTTAGATGATCAAGCCTTGCAAgtgagtaacc ... tttgacccagGTGGTTTTGAAATCATTTTTGGCCAAAATCTACAAGCGCGAAAAGTAGGGT