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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGTTGCTCGAGATGGTTTCCATGGTTTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAGgtatcatatcttaatcattcatgctgttcacaagatgtgccagttgacaagggttgtaccatgtaggtgtatgccagtgcttatgaatatgcgaagagag...

Basic information

species Physcomitrella patens
transcript PP1S91_149V6.5
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162158484|gb|FC334487.1|FC334487
EST:     TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG                         TATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
genomic: TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAGgtatcatatc ... ttgtttgtagTATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
EST: gi|162152927|gb|FC329229.1|FC329229
EST:     TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG                         TATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
genomic: TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAGgtatcatatc ... ttgtttgtagTATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
EST: gi|67578907|gb|BJ951074.1|BJ951074
EST:     TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG                         TATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
genomic: TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAGgtatcatatc ... ttgtttgtagTATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
EST: gi|37833620|gb|BJ591632.1|BJ591632
EST:     TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG                         TATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
genomic: TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAGgtatcatatc ... ttgtttgtagTATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
EST: gi|18333443|gb|BJ165458.1|BJ165458
EST:     TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAG                         TATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA
genomic: TTGTACCGCGGTTTTGTTCCGAACGTGCTGAAAAACCTCCCAAACAGCAGgtatcatatc ... ttgtttgtagTATTCGATTGACGACCTTTGATGCTGCCAAGAATCTAATTACCGCTAGCCA