1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCGTGACTCCCACAGTGGAAGAGGAAGGGACAGAGATAGAGAACGCGAGCGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtgcactcacctgttttatgtacttgtaagaatttatccgatattggccattgcagtttaacagttcatatagtgtaggtccgttttgttaactgagttcgttttttctgttccatggtgtatttaccactacttgtggttctaaaaagcag
species | Physcomitrella patens |
transcript | PP1S88_36V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCGEST: gi|162158449|gb|FC334244.1|FC334244
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
EST: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCGEST: gi|67699116|gb|BJ959349.1|BJ959349
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
EST: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCGEST: gi|162235734|gb|FC411037.1|FC411037
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
EST: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGTGACTCCCACAGTGGAAGAGGAAGGGACAGAGATAGAGAACGCGAGCGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtgcactcacctgttttatgtacttgtaagaatttatccgatattggccattgcagtttaacagttcatatagtgtaggtccgttttgttaactgagttcgttttttctgttccatggtgtatttaccactacttgtggttctaaaaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA