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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGCCCCAACTACCAAAAAGGGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcacaacgatttgggtttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaactggcttgatgaagtgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcag

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA08G17010.2 (Glycine max), 5'ss of exon 11
AGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGCCCCAACTACCAAAAAGGGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcacaacgatttgggt--ttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaactggcttgatgaagtgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcag
|||     | || || || ||  |||||||||| ||||||||||| || || || || |||||||||| ||| ||||  |||||||| ||||| || |||||||   | ||| |  ||  |  || |     ||| |          | |  ||   | |||||   || | |      |||   | ||  |  | |  |   |     ||                                                                           
AGCAAAGATGCACATCTACGTGAGGAGAGGAGGTCCCAACTACCAGAAGGGTCTAGCAAAAATGAGGGCACTTGGAGAGGAGATTGGCATTCCTATCGAGgtta--tataactaactgattcctttattgattgtattaacaaaccatctaaaccgatgctcaattttctt-taggaactttctctgatctagtatttggtctctttacag---------------------------------------------------------------------------

upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA15G42140.2 (Glycine max), 5'ss of exon 11
AGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGCCCCAACTACCAAAAAGGGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcacaacgatttgggtttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaactggcttgatgaagtgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcag
|||     | || || |||||  |||||||||| ||||||||||| || || || || |||||||||| ||| ||||  || ||||| ||||| ||||||||||   | ||| |  ||  || |        | |    |||||||    | ||  ||| |||  |  || ||     ||  || |  ||||  |    ||  |   | |      |  ||| |                                                            
AGCAAAGATGCACATCTATGTGAGGAGAGGAGGTCCCAACTACCAGAAGGGTCTAGCAAAAATGAGGGCACTCGGAGAGGAAATTGGCATTCCTATTGAGgtta--tataactaactgatttcct-------tttatgattgtgttaagaa-accatctgaac--tgatacttacaaatttttttaaggaacgttt---tatgatatatattttggtctctttacag---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208394814|gb|DC920157.1|DC920157
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67699027|gb|BJ959260.1|BJ959260
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162274022|gb|FC450369.1|FC450369
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208374183|gb|DC945229.1|DC945229
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208371001|gb|DC944376.1|DC944376
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208362836|gb|DC950636.1|DC950636
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAN
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162223607|gb|FC399419.1|FC399419
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162270681|gb|FC446294.1|FC446294
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208369217|gb|DC956050.1|DC956050
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208367644|gb|DC955003.1|DC955003
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|13315390|gb|BG409045.1|BG409045
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|37846179|gb|BJ604187.1|BJ604187
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162203672|gb|FC378547.1|FC378547
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67701044|gb|BJ961277.1|BJ961277
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208374459|gb|DC948435.1|DC948435
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208366133|gb|DC955234.1|DC955234
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67722000|gb|BJ972259.1|BJ972259
EST:     TGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: TGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162198094|gb|FC372121.1|FC372121
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67724921|gb|BJ975180.1|BJ975180
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208386150|gb|DC949061.1|DC949061
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208364385|gb|DC950686.1|DC950686
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208390780|gb|DC945853.1|DC945853
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|37851290|gb|BJ609298.1|BJ609298
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208386182|gb|DC949093.1|DC949093
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|37845304|gb|BJ603312.1|BJ603312
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208370928|gb|DC944303.1|DC944303
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162184487|gb|FC359961.1|FC359961
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208379626|gb|DC927123.1|DC927123
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|18341274|gb|BJ173308.1|BJ173308
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67725040|gb|BJ975299.1|BJ975299
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|13315646|gb|BG409301.1|BG409301
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208364465|gb|DC958034.1|DC958034
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162198093|gb|FC372120.1|FC372120
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67721605|gb|BJ971864.1|BJ971864
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208384409|gb|DC928160.1|DC928160
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67720385|gb|BJ970644.1|BJ970644
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208368243|gb|DC951509.1|DC951509
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208354287|gb|DC957465.1|DC957465
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208360305|gb|DC950250.1|DC950250
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162169806|gb|FC346162.1|FC346162
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67691916|gb|BJ952149.1|BJ952149
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162177053|gb|FC353106.1|FC353106
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208379943|gb|DC927669.1|DC927669
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67722874|gb|BJ973133.1|BJ973133
EST:     GAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 11

AGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGCCCCAACTACCAAAAAGGGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTCGTGTCCAGATTTATGTCCGGAGAGGAGGCCCCAACTACCAAAAAGGGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcacaacgatttgggtttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaactggcttgatgaagtgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA