1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCCTTGATGAGCCAAGGTTACGAGCTGGTGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctgtgcattccctctataacatcatttcatgctattgcagctttcgaagaaagaacattgaatagttattaacgaaatctttcatttttttag
species | Physcomitrella patens |
transcript | PP1S79_54V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|162182304|gb|FC357175.1|FC357175
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37852647|gb|BJ610655.1|BJ610655
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: GTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCEST: gi|162155360|gb|FC331766.1|FC331766
genomic: GTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAA-CCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGC
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37845693|gb|BJ603701.1|BJ603701
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37850584|gb|BJ608592.1|BJ608592
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37847210|gb|BJ605218.1|BJ605218
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37850496|gb|BJ608504.1|BJ608504
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|67698707|gb|BJ958940.1|BJ958940
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|208388379|gb|DC949323.1|DC949323
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37840030|gb|BJ598038.1|BJ598038
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37838492|gb|BJ596500.1|BJ596500
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37833067|gb|BJ591079.1|BJ591079
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|67575248|gb|BJ948072.1|BJ948072
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|37838309|gb|BJ596317.1|BJ596317
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCGEST: gi|162179834|gb|FC355905.1|FC355905
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
EST: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAG GGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
genomic: TGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctg ... atttttttagGGTGTGGACGGCTCTAGAGTGGAGCGAGTGATGGAGCTTGCTCATATTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTGATGAGCCAAGGTTACGAGCTGGTGTCCGGTGGAACAGAGAACCATTTGGTGTTAGTGAACCTCAAACCCAAGgtatttcctgtgcattccctctataacatcatttcatgctattgcagctttcgaagaaagaacattgaatagttattaacgaaatctttcatttttttag
- - - - - - - - - - - - - - - - GGTGGA