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GCTGCAGCCTTGGCACTGCAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgggctgatgtatcagttaatttgctttacttgatatattcttgaggcaggctctcctcttagttcttgtgtgggcaaagtagctttaatttt...
species | Physcomitrella patens |
transcript | PP1S78_56V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGGTTCCAGAAGTTAATAGTACCTGGACTGATGAATACATTAGGCA GTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGATEST: gi|208372298|gb|DC948487.1|DC948487
genomic: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgg ... tcatgaacagGTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
EST: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCA GTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGATEST: gi|208363391|gb|DC946989.1|DC946989
genomic: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgg ... tcatgaacagGTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
EST: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCA GTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGATEST: gi|67696740|gb|BJ956973.1|BJ956973
genomic: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgg ... tcatgaacagGTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
EST: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCA GTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGATEST: gi|208374118|gb|DC952549.1|DC952549
genomic: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgg ... tcatgaacagGTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
EST: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCA GTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGATEST: gi|67695414|gb|BJ955647.1|BJ955647
genomic: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgg ... tcatgaacagGTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
EST: CAGAAGGTTCCAGAAGTCAATAGTACNTGGACTGATGAATACATTAGGCA GTACCATAATGTCAACATCAGTGTTNCTGTCCAGACTGAGCACGGACTGATEST: gi|208370468|gb|DC952171.1|DC952171
genomic: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgg ... tcatgaacagGTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
EST: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCA GTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGATEST: gi|67698433|gb|BJ958666.1|BJ958666
genomic: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgg ... tcatgaacagGTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
EST: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCA GTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
genomic: CAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgg ... tcatgaacagGTACCATAATGTCAACATCAGTGTTGCTGTCCAGACTGAGCACGGACTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCAGCCTTGGCACTGCAGAAGGTTCCAGAAGTCAATAGTACCTGGACTGATGAATACATTAGGCAgtaagtgtgggctgatgtatcagttaatttgctttacttgatatattcttgaggcaggctctcctcttagttcttgtgtgggcaaagtagctttaatttt
- - - - - - - - - - - - - - AGAAGT