1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGTTCCAGAAGCTGTCAATAGCACCAGTATCTTGGAACCTGTTCATAGGCTTAATAGAGACTCACGTTCTGAGACTACTCCTGAAACCTCAGAAGTGCAGgtgcgtttcatcctatctttagaacatcacgtgttgaccttcacgtatctgttaagaattaggggttttaagattctagtagatttcagcagttgagtattaaacgaaactttatttggacatgaaacag
species | Physcomitrella patens |
transcript | PP1S78_164V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTAATAGAGACTCACGTTCTGAGACTACTCCTGAAACCTCAGAAGTGCAG GAATCATCTCGAGGACAAGTTGCAGGAAATGTTCCAGCTGCTGAGGTAGTAEST: gi|162217681|gb|FC393773.1|FC393773
genomic: TTAATAGAGACTCACGTTCTGAGACTACTCCTGAAACCTCAGAAGTGCAGgtgcgtttca ... catgaaacagGAATCATCTCGAGGACAAGTTGCAGGAAATGTTCCAGCTGCTGAGGTAGTA
EST: TTAATAGAGACTCACGTTCTGAGACTACTCCTGAAACCTCAGAAGTGCAG GAATCATCTCGAGGACAAGTTGCAGGAAATGTTCCAGCTGCTGAGGTEST: gi|162252693|gb|FC428730.1|FC428730
genomic: TTAATAGAGACTCACGTTCTGAGACTACTCCTGAAACCTCAGAAGTGCAGgtgcgtttca ... catgaaacagGAATCATCTCGAGGACAAGTTGCAGGAAATGTTCCAGCTGCTGAGGT
EST: TTAATAGAGACTCACGTTCTGAGACTACTCCTGAAACCTCAGAAGTGCAG GAATCATCTCGAGGACAAGTTGCAGGAAATGTTCCAGCTGCTGAGGTAGTA
genomic: TTAATAGAGACTCACGTTCTGAGACTACTCCTGAAACCTCAGAAGTGCAGgtgcgtttca ... catgaaacagGAATCATCTCGAGGACAAGTTGCAGGAAATGTTCCAGCTGCTGAGGTAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTTCCAGAAGCTGTCAATAGCACCAGTATCTTGGAACCTGTTCATAGGCTTAATAGAGACTCACGTTCTGAGACTACTCCTGAAACCTCAGAAGTGCAGgtgcgtttcatcctatctttagaacatcacgtgttgaccttcacgtatctgttaagaattaggggttttaagattctagtagatttcagcagttgagtattaaacgaaactttatttggacatgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT