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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTGAATTCCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtctttttcatttaacatccttaaatctcataggaattcctttcattgggagatccttctttgctttgactagccttaccaatattttaaaaataaaatgttaagttgatgctggatataagcagcaacttaatcatggtttttttggcag

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376489|gb|DC922520.1|DC922520
EST:     CCCCGTCACCCCTATTCCAAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208364850|gb|DC957887.1|DC957887
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208372243|gb|DC948046.1|DC948046
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208356591|gb|DC922381.1|DC922381
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|37839167|gb|BJ597175.1|BJ597175
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208383807|gb|DC928082.1|DC928082
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGCCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|67720885|gb|BJ971144.1|BJ971144
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208345159|gb|DC925457.1|DC925457
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|162227965|gb|FC404585.1|FC404585
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|162163035|gb|FC338425.1|FC338425
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|67699393|gb|BJ959626.1|BJ959626
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|37843958|gb|BJ601966.1|BJ601966
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208362330|gb|DC954576.1|DC954576
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208347730|gb|DC925603.1|DC925603
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|162160597|gb|FC337172.1|FC337172
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208394555|gb|DC953594.1|DC953594
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208374223|gb|DC945269.1|DC945269
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|67720670|gb|BJ970929.1|BJ970929
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTNTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|67722619|gb|BJ972878.1|BJ972878
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|162184643|gb|FC360841.1|FC360841
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|18337850|gb|BJ169874.1|BJ169874
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208353070|gb|DC926093.1|DC926093
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208368488|gb|DC947889.1|DC947889
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208369247|gb|DC944564.1|DC944564
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208395850|gb|DC924260.1|DC924260
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|37841119|gb|BJ599127.1|BJ599127
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|67727318|gb|BJ977577.1|BJ977577
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208365534|gb|DC954775.1|DC954775
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGCTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208347297|gb|DC925321.1|DC925321
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|162175918|gb|FC351596.1|FC351596
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208394056|gb|DC957137.1|DC957137
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208346565|gb|DC916831.1|DC916831
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|18340220|gb|BJ172248.1|BJ172248
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208367374|gb|DC951292.1|DC951292
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGCCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208356213|gb|DC957331.1|DC957331
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTNTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|37845825|gb|BJ603833.1|BJ603833
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|208374190|gb|DC945236.1|DC945236
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|37840264|gb|BJ598272.1|BJ598272
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|162209215|gb|FC385434.1|FC385434
EST:     CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: CCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
EST: gi|67722488|gb|BJ972747.1|BJ972747
EST:     AGGAGAAAGTTGGTCGACACTAATGCAGCTG                         GTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA
genomic: AGGAG-AAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 34 (downstream exon)
Score: 16

GTGACTGAATTCCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtcttt ... tttttggcagGTGACTCTTTTGTCGGAGGGTTCTTGTCTCAGCTGGTGTTGGGTAAAGACATCGCACAGTGCGTCAGAGCAGGAAACTACGCAGCCAGCGTCATCATCCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGACTGAATTCCCCGTCACCCCTATTCCTAAGGAGAAGTTGGTCGACACTAATGCAGCTGgtaagtctttttcatttaacatccttaaatctcataggaattcctttcattgggagatccttctttgctttgactagccttaccaatattttaaaaataaaatgttaagttgatgctggatataagcagcaacttaatcatggtttttttggcag

- - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG