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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCTGTGACGGAGCACTACACGGCTGGAGATCATGGTCCAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAGgtacttcctcatgagttcgtattcaagtttaataaattgcacaggatcaatacacctcctgtccaggatggaacccattccagtgtggtattctacacct...

Basic information

species Physcomitrella patens
transcript PP1S72_188V6.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153696|gb|FC329099.1|FC329099
EST:     CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAG                         GTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
genomic: CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAGgtacttcctc ... actattgcagGTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
EST: gi|162155187|gb|FC331683.1|FC331683
EST:     CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAG                         GTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
genomic: CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAGgtacttcctc ... actattgcagGTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
EST: gi|162153697|gb|FC329100.1|FC329100
EST:     CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAG                         GTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
genomic: CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAGgtacttcctc ... actattgcagGTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
EST: gi|18332622|gb|BJ164635.1|BJ164635
EST:     CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAG                         GTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
genomic: CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAGgtacttcctc ... actattgcagGTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
EST: gi|208373960|gb|DC944693.1|DC944693
EST:     CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAG                         GTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
genomic: CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAGgtacttcctc ... actattgcagGTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
EST: gi|37841040|gb|BJ599048.1|BJ599048
EST:     CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAG                         GTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
genomic: CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAGgtacttcctc ... actattgcagGTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
EST: gi|208374836|gb|DC956109.1|DC956109
EST:     CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAG                         GTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC
genomic: CAAGATTCGTACCTGGTGTTTTCTTCTTTTACGACCTCTCACCCATAAAGgtacttcctc ... actattgcagGTTAAGTTCTCAGAGGAGAGACCATCTTTTTTGCATTTTCTGACAAATGTC