1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAATTGTGTTGATTTTCTTCTTAATGGGTATAATGAAGACATCGAAGTGCCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAGgtacgaactattttctttactttccaaggatgtgaatatctttgatgttattgagaatctagtcttgatttttgtatggagtcgtgaatatgaacgtctg...
species | Physcomitrella patens |
transcript | PP1S70_186V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAG ATCTATAGCAGCAGGTGCAGTTGGTGCTAGCCTAGGCGGAGTACCTGGTCAEST: gi|162181260|gb|FC357042.1|FC357042
genomic: CCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAGgtacgaacta ... atgtgtgcagATCTATAGCAGCAGGTGCAGTTGGTGCTAGCCTAGGCGGAGTACCTGGTCA
EST: CCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAG ATCTATAGCAGCAGGTGCAGTTGGTGCTAGCCTAGGCGGAGTACCTGGTCAEST: gi|162257966|gb|FC433852.1|FC433852
genomic: CCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAGgtacgaacta ... atgtgtgcagATCTATAGCAGCAGGTGCAGTTGGTGCTAGCCTAGGCGGAGTACCTGGTCA
EST: CCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAG ATCTATAGCAGCAGGTGCAGTTGGTGCTAGCCTAGGCGGAGTACCTGGTCAEST: gi|162229618|gb|FC405913.1|FC405913
genomic: CCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAGgtacgaacta ... atgtgtgcagATCTATAGCAGCAGGTGCAGTTGGTGCTAGCCTAGGCGGAGTACCTGGTCA
EST: CCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAG ATCTATAGCAGCAGGTGCAGTTGGTGCTAGCCTAGGCGGAGTACCTGGTCA
genomic: CCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAGgtacgaacta ... atgtgtgcagATCTATAGCAGCAGGTGCAGTTGGTGCTAGCCTAGGCGGAGTACCTGGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATTGTGTTGATTTTCTTCTTAATGGGTATAATGAAGACATCGAAGTGCCATGGGAACCCATTCAACAACATGGAGGTGTAATACAAATGGGCGACAGgtacgaactattttctttactttccaaggatgtgaatatctttgatgttattgagaatctagtcttgatttttgtatggagtcgtgaatatgaacgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG