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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGACACATGCCTGTTCCTTCTAACTGCCGATCCAGAAGGATTTTTCCGACTTCAGGAGTGCAGgtaattacattggcgtttctaagttcgaagttattgtagtccgcttttaatatgcttactgttgcacatctgatgctactttttgggatgtgttgtattg...

Basic information

species Physcomitrella patens
transcript PP1S55_143V6.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162220592|gb|FC396804.1|FC396804
EST:     CAGGAGTGCAG                         AGCACGGATTGAAACCCTTCTGCGAGAAACCGATGTGCTAGCCGAGGTTGC
genomic: CAGGAGTGCAGgtaattacat ... tgccttgcagAGCACGGATTGAAACCCTTCTGCGAGAAACCGATGTGCTAGCCGAGGTTGC
EST: gi|100443287|gb|BY963583.1|BY963583
EST:     TTCCTTCTAACTGCCGATCCAGAAGGATTTTTCCGACTTCAGGAGTGCAG                         AGCACGGATTGAAACCCTTCTGCGAGAAACCGATGTGCTAGCCGAGGTTGC
genomic: TTCCTTCTAACTGCCGATCCAGAAGGATTTTTCCGACTTCAGGAGTGCAGgtaattacat ... tgccttgcagAGCACGGATTGAAACCCTTCTGCGAGAAACCGATGTGCTAGCCGAGGTTGC
EST: gi|162220593|gb|FC396805.1|FC396805
EST:     CAGGAGTGCAG                         AGCACGGATTGAAACCCTTCTGCGAGAAACCGATGTGCTAGCCGAGGTTGC
genomic: CAGGAGTGCAGgtaattacat ... tgccttgcagAGCACGGATTGAAACCCTTCTGCGAGAAACCGATGTGCTAGCCGAGGTTGC