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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATGCTCTGTGCAGATCATGGCCCTGCTGTGTCTGGAGCACACAACACTATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTGgtacagtctaaattgcagaagctatgttatgtatgaagctcttgaaatattctttgctattgctaaagcttgccccgttatacttatcagaattgtgtaactgatttatatttttttaatgaatactag

Basic information

species Physcomitrella patens
transcript PP1S46_63V6.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S46_63V6.2 (Physcomitrella patens), 5'ss of exon 12
lower sequence: Vv05s0077g00950.t01 (Vitis vinifera), 5'ss of exon 13
ATAATGCTCTGTGCAGATCATGGCCCTGCTGTGTCTGGAGCACACAACACTATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTGgtacagtctaaattgcagaagctatgttatgtatgaagctcttgaaatattctttgctattgctaaagcttgccccgttatacttatcagaattgtgtaactgatttatatttttttaatgaatactag
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ATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgta-------aattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaat------gctgtagtgtgggcttttgtg-aactgattt-------tataatggaaacag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698315|gb|BJ958548.1|BJ958548
EST:     TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTG                         GTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTGgtacagtcta ... tgaatactagGTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|67574889|gb|BJ947713.1|BJ947713
EST:     TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTG                         GTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTGgtacagtcta ... tgaatactagGTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|67699841|gb|BJ960074.1|BJ960074
EST:     TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTG                         GTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTGgtacagtcta ... tgaatactagGTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|208366526|gb|DC955602.1|DC955602
EST:     TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTG                         GTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTGgtacagtcta ... tgaatactagGTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|162196012|gb|FC372183.1|FC372183
EST:     TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTG                         GTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTGgtacagtcta ... tgaatactagGTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|100385297|gb|BY950889.1|BY950889
EST:     TATTGTCACTGCTCGTGCAGGANAGGACTTGGTATTAAGTCTTGTGTCTG                         GTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTGTGTCTGgtacagtcta ... tgaatactagGTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTC