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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATGAAATACAAGGAAGCAGCTGACCTTGCAGCTGAATCACCAAAAGGAATACTTCGAACTCCAGATACGGTGGCCAAATTTCAGGCAAGTCACCCAgtcgtacttttgcccaaattttgtttcataaaagttgcttactttaatttgtgtctttcttcctagttcactagcttatagaatctttagtctcttttttttgaagtccctgtctgtaacacatcagactagcttgtttttgtttctgacttaactcatggaattaacatgttttactctactattacag

Basic information

species Physcomitrella patens
transcript PP1S452_30V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S452_30V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 11
------------TCAAATGAAATACAAGGAAGCAGCTGACCTTGCAGCTGAATCACCAAAAGGAATACTTCGAACTCCAGATACGGTGGCCAAATTTCAGGCAAGTCACCCAgtcgtacttttgcccaaattttgtttcataaaagttgcttactttaatttgtgtctttcttcctagttcactagcttatagaatctttagtctcttttttttgaagtccctgtctgtaacacatcagactagcttgtttttgtttctgacttaactcatggaattaacatgttttactctactattacag
             ||||  ||||| |||||||| || || |||||||||||||| ||| ||||||| ||||||||||| || || || |||||||||||||    |     ||  ||  |  |  |  |   |||| ||       ||||||  ||| |      |  |||       |||| |  ||  | |  |   |  |  | |||   ||  |||| | | | |     || ||  ||   |||||    | |    ||| ||  |  |  |  ||                     
TGAACTGTTTGCCCAAACAAAATATAAGGAAGCTGCAGAACTTGCAGCTGAATCTCCACAAGGAATCCTTCGAACTCCTGACACAGTTGCCAAATTTCAGgtttcttgataagatgt--tgctatctgagaattgtctc-------ttgctt--ttttagccactttattcacagagattcattttctggttgt-ttactgtttgcctttaggtggtgtccttttgtttggtcaattag-ttataatgtttaaaatgcca--ttatctgctttacgtggcag--------------------

upper sequence: PP1S452_30V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 11
------------TCAAATGAAATACAAGGAAGCAGCTGACCTTGCAGCTGAATCACCAAAAGGAATACTTCGAACTCCAGATACGGTGGCCAAATTTCAGGCAAGTCACCCAgtcgtacttttgcccaaattttgtttcataaaagttgcttactttaatttgtgtctttcttcctagttcactagcttatagaatctttagtctcttttttttgaagtccctgtctgtaacacatcagactagcttgtttttgtttctgacttaactcatggaattaacatgttttactctactattacag
             ||||  ||||| |||||||| || || |||||||||||||| ||| ||||||| ||||||||||| || || || |||||||||||||    |     ||  ||   | |     |||||| | |         |||||  ||| |  |   || |||       |||| |  ||  | |  |   |  |  | |||   ||| |||| | | | |     || ||  ||   |||||    | |    ||| ||  |  |  |  ||                     
TGAACTGTTTGCCCAAACAAAATATAAGGAAGCTGCAGAGCTTGCAGCTGAATCTCCACAAGGAATCCTTCGAACTCCTGACACAGTTGCCAAATTTCAGgtttcttgataagatgttgctatctgggaattttctct---------tgctt--ttttagctacttcattcacagagattcattttctggttgt-ttactgtttgcctttaggtgatgtccttttgtttggtcaattag-ttataatgtttaaaatgcca--ttatctgctttatgtggcag--------------------

upper sequence: PP1S452_30V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 11
------------TCAAATGAAATACAAGGAAGCAGCTGACCTTGCAGCTGAATCACCAAAAGGAATACTTCGAACTCCAGATACGGTGGCCAAATTTCAGGCAAGTCACCCAgtcgtacttttgcccaaattttgtttcataaaagttgcttactttaatttgtgtctttcttcctagttcactagcttatagaatctttagtctcttttttttgaagtccctgtctgtaacacatc-agactagcttgtttttgtttctgacttaactcatggaattaacatgttttactctactat-tacag---
             ||||  || || || ||||||||||| ||||| ||||| || ||| ||||||| ||||| || || ||||| || |||||||||||||      |   |    ||       | ||    | ||| |     ||||    |||| ||       |||   |||||   |  | |||   | |   | |           |  |||     || || ||    |  ||  | | |  ||||  |     | |   ||       ||||  |||     |||  | | |   |   
TGAACTGTTTGCCCAAACCAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCTCCACAAGGAATCCTTCGCACACCTGATACAGTTGCCAAATTTCAGgttttgtatataag-atatagccatcaaa----tatttta-----gttgtgctctttcatcaacaaatttaa-cctagacaatcatctttgtggagaatgatggataaaggataaaaga----gtttgaaatgtttttaggtttgttctttttcttggtcaattaggctgtcatgtttaaagtgtcacgatctgttttatgtggcag