1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CATTCGACGTCGACTAGGGGGTGGCTCTAGTGGAATGAATTCATTAGACGCACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACTgtaagaatctcggttcatctgtactgttggttttttgggtccatggtgacacgccttcttttttctttttttttgtgttgtttttgttttgtttttgttt...
species | Physcomitrella patens |
transcript | PP1S430_12V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CGCCACAAAGGACACT GCTCTTGGGGGTTTAGCAGAACCAGAGCGCATGCATTCTTCTCCATTTGTGEST: gi|162159612|gb|FC335790.1|FC335790
genomic: CGCCACAAAGGACACTgtaagaatct ... gatgtatcagGCTCTTGGGGGTTTAGCAGAACCAGAGCGCGTGCATTCTTCTCCATTTGTG
EST: CACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACT GCTCTTGGGGGTTTAGCAGAACCAGAGCGCATGCATTCTTCTCCATTTGTGEST: gi|162270879|gb|FC446908.1|FC446908
genomic: CACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACTgtaagaatct ... gatgtatcagGCTCTTGGGGGTTTAGCAGAACCAGAGCGCGTGCATTCTTCTCCATTTGTG
EST: CACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACT GCTCTTGGGGGTTTAGCAGAACCAGAGCGCGTGCATTCTTCTCCATTTGTGEST: gi|162196970|gb|FC373336.1|FC373336
genomic: CACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACTgtaagaatct ... gatgtatcagGCTCTTGGGGGTTTAGCAGAACCAGAGCGCGTGCATTCTTCTCCATTTGTG
EST: CACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACT GCTCTTGGGGGTTTAGCAGAACCAGAGCGCATGCATTCTTCTCCATTTGTGEST: gi|162240778|gb|FC416344.1|FC416344
genomic: CACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACTgtaagaatct ... gatgtatcagGCTCTTGGGGGTTTAGCAGAACCAGAGCGCGTGCATTCTTCTCCATTTGTG
EST: CACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACT GCTCTTGGGGGTTTAGCAGAACCAGAGCGCATGCATTCTTCTCCATTTGTG
genomic: CACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACTgtaagaatct ... gatgtatcagGCTCTTGGGGGTTTAGCAGAACCAGAGCGCGTGCATTCTTCTCCATTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTCGACGTCGACTAGGGGGTGGCTCTAGTGGAATGAATTCATTAGACGCACCAAAACATAAAAGTCCTGGTCCAGATGACGGCGCCACAAAGGACACTgtaagaatctcggttcatctgtactgttggttttttgggtccatggtgacacgccttcttttttctttttttttgtgttgtttttgttttgtttttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG