1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAGGACTATGTTGCGTGGGTGTGTGACCAGGACGCTTACGCTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatatacatttcttttagagcatgttttcgaggcaattcttttaaatgtacatggatctagctctgagagtattattgctgtacatcattgaagtcgacttaaaaagcattttgttagttgaccaacttggtcttttacaataagtccatatctgtgatgtccatattttcttcgttgcag
species | Physcomitrella patens |
transcript | PP1S41_177V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AATCAATACTATTTATGCATGAG AACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAAEST: gi|162192524|gb|FC368634.1|FC368634
genomic: AATCAATACTATTTATGCATGAGgttccatata ... ttcgttgcagAACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAA
EST: -TGNCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAG AACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAAEST: gi|162278733|gb|FC454843.1|FC454843
genomic: TTG-CAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatata ... ttcgttgcagAACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAA
EST: CTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAG AACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAAEST: gi|162230101|gb|FC406249.1|FC406249
genomic: CTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatata ... ttcgttgcagAACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAA
EST: CTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAG AACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAAEST: gi|162278732|gb|FC454842.1|FC454842
genomic: CTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatata ... ttcgttgcagAACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAA
EST: CTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAG AACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAAEST: gi|162249310|gb|FC423980.1|FC423980
genomic: CTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatata ... ttcgttgcagAACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAA
EST: CTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAG AACTGGGCAAATCAAAATTTTTTEST: gi|162214450|gb|FC391209.1|FC391209
genomic: CTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatata ... ttcgttgcagAACTGGGCAAATCAAAATTTTTT
EST: AAAATGCTCAGCACAATCAATACTATTTATGCATGAG AACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAA
genomic: AAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatata ... ttcgttgcagAACTGGGCAAATCAAAATTTTTTGGAGAGATTAAAAAAGCTTGCATCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGACTATGTTGCGTGGGTGTGTGACCAGGACGCTTACGCTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatatacatttcttttagagcatgttttcgaggcaattcttttaaatgtacatggatctagctctgagagtattattgctgtacatcattgaagtcgacttaaaaagcattttgttagttgaccaacttggtcttttacaataagtccatatctgtgatgtccatattttcttcgttgcag
- - - - - - - - - - - - - - - - - - - - - - AGTGGA