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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTAGTGGTGGTGCTCCTCAGTCAAGTTTTGTTTGGGATGAAGCCTCTGGATACTATTATGATGCTTCCTCGGGTTTTTACTATGATGGGAATCGAGgtagcaacttcggttgtccagtcaaaagcctctttgattgctaaatttgccttgagttaagccttatgttgtgtacagatctgagatttcaattagaatg...

Basic information

species Physcomitrella patens
transcript PP1S40_67V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S40_67V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA08G35510.1 (Glycine max), 5'ss of exon 12
GGAGGTAGTGGTGGTGCTCCTCAGTCAAGTTTTGTTTGGGATGAAGCCTCTGGATACTATTATGATGCTTCCTCGGGTTTTTACTATGATGGGAATCGAGgtagcaacttcggttgt-ccagtc--aaaagcctct-ttgattgc--taaatttgccttgagttaagccttatgttgtgtacagatctgagatttcaattagaatg
||       | ||||||||| || ||| | ||||||||||||||||| || || || || ||||||||| | || || |||||||||||||| |||   ||||   |  | | |||     |||  |||||||| | ||| ||    ||||  |   |  |    |   || | |  || | || |   |  | |||  | |    
GGTCCAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGCTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGgtatgtatcttgattgagttggtcggaaaagcctgtattgtttatcttaaaagtttatcaaaagcatttttgtttgctgcataggt---aattctcatgttgc---

upper sequence: PP1S40_67V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 12
GGAGGTAGTGGTGGTGCTCCTCAGTCAAGTTTTGTTTGGGATGAAGCCTCTGGATACTATTATGATGCTTCCTCGGGTTTTTACTATGATGGGAATCGAGgta-gcaacttcggttgtccagtcaaaagcctctttgattgctaaatttgcc--ttgagttaagccttatgttgtgtacag-atctgagatt-tcaattagaatg
|| |     | ||||||||| || ||| | ||||||||||||||||| || || || || ||||||||| | || || |||||||||||||| |||   |||| ||| |||   |      ||   ||    || | |||| | |  ||     || |   ||  | | | |||| | | | || ||  ||| |||| |||    
GGTGCAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGgtatgcatcttgattgagttggttgtaaaagcctgt-attgtttatcttaaaagtttatcaaaagcattttttgtttgctgcatatgtaattctcaagtag----

upper sequence: PP1S40_67V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 12
GGAGGTAGTGGTGGTGCTCCTCAGTCAAGTTTTGTTTGGGATGAAGCCTCTGGATACTATTATGATGCTTCCTCGGGTTTTTACTATGATGGGAAT-CGAGgtagcaactt---cggttgtccagtcaaaagcctcttt---gattgctaaatttgccttgagtta-agccttatgttgtgtacagatctgagatttcaattagaatg
  |     ||||   ||||| |||||  ||||||| ||||||||| | ||||| || |||||||||||| | || || || ||||||||||| ||  |  | | | | |||    | |||   | |   |||| || |     | |||  |||||  | ||| ||  || | ||| |  |   ||  |||      ||| ||      
CAAAAGGATGGTTCAGCTCCACAGTCTGGTTTTGTGTGGGATGAAACATCTGGCTATTATTATGATGCTGCTTCTGGGTTCTACTATGATGGAAACACAGgttggtatcttgtgtgcttgcttatttggaagcgtcctgtgaaactgcagaattttgcatgaattgcagacctat-taataagcaattcta----ctcagttctg---