1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGACCACCGCAGTGGAAGTGGAAGGGGAAGAGATAGAGACAGAGACGGCGAGCGCGATCGTGGAAGATCAGACCGTGACTACAATAGTCGTAGCCGTAGgtcagtcttttccttacctaggacaaggaatagctcatagaacattggtcactgcagttaagcagttcatatgatgcaggtttgtttggtcaagcttgtgagttggttttctctggttcatcgtgtgcttaaaacagtacctgtgatcttaaatgcag
species | Physcomitrella patens |
transcript | PP1S402_41V6.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAGCGCGATCGTGGAAGATCAGACCGTGACTACAATAGTCGTAGCCGTAG ATCACGATCGCGCTCAAGAGAACGTTCCAGAGATAGAGACAGGAGTGATCGEST: gi|162158387|gb|FC334182.1|FC334182
genomic: GAGCGCGATCGTGGAAGATCAGACCGTGACTACAATAGTCGTAGCCGTAGgtcagtcttt ... ttaaatgcagATCACGATCGCGCTCAAGAGAACGTTCCAGAGATAGAGACAGGAGTGATCG
EST: GAGCGCGATCGTGGAAGATCAGACCGTGACTACAATAGTCGTAGCCGTAG ATCACGATCGCGCTCAAGAGAACGTTCCAGAGATAGAGACAGGAGTGATCGEST: gi|22492634|gb|BU052557.1|BU052557
genomic: GAGCGCGATCGTGGAAGATCAGACCGTGACTACAATAGTCGTAGCCGTAGgtcagtcttt ... ttaaatgcagATCACGATCGCGCTCAAGAGAACGTTCCAGAGATAGAGACAGGAGTGATCG
EST: GGAAGATCAGACCGTGACTACAATAGTCGTAGCCGTAG ATCACGATCGCGCTCAAGAGAACGTTCCAGAGATAGAGACAGGAGTGATCG
genomic: GGAAGATCAGACCGTGACTACAATAGTCGTAGCCGTAGgtcagtcttt ... ttaaatgcagATCACGATCGCGCTCAAGAGAACGTTCCAGAGATAGAGACAGGAGTGATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACCACCGCAGTGGAAGTGGAAGGGGAAGAGATAGAGACAGAGACGGCGAGCGCGATCGTGGAAGATCAGACCGTGACTACAATAGTCGTAGCCGTAGgtcagtcttttccttacctaggacaaggaatagctcatagaacattggtcactgcagttaagcagttcatatgatgcaggtttgtttggtcaagcttgtgagttggttttctctggttcatcgtgtgcttaaaacagtacctgtgatcttaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA