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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCAAAGACTAGCTTCAAAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttctgttttttgtttttttattttttatttttacatgtattttcgattatatatatatatatcacacacactgaagtagtctcagcattcagt...

Basic information

species Physcomitrella patens
transcript PP1S35_94V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S35_94V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 12
GTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCAAAGACTAGCTTCAAAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttctgttttttgtttttttattttttatttttacatgtattttcgattatat-atatatatatcacacacactgaagtagtctcagcattcagt----------------------------------------------------------
   ||      | || || ||  |  |||| ||||  ||||| |||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||| |  || || ||     || || |||| |  |  |  ||   |  ||   || | ||   ||   |   |   | |||| |||      |    | |                                                            
AAAGGCTGATAAGGAAGGATTTGAGATAAGTGTTGTTAAGACCAGCTTCAAGGCAAACACGAAGGCTCTGGCTGAGAATGAAGGAGATGGACTTGCTAAGgtgattctacttttccaccttattgtattctagacctaaactgtttcttataatcacattggatccttgcaatgaatactgtagtcagactaatgctaaagaggaaatctatccttggaacttgaaaatgatgagacatgaactctacttttgctacag

upper sequence: PP1S35_94V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 12
GTTGGGAACGGAAGAGGGTTTCAAAGTAAGCGTTGCAAAGACTAGCTTCAAAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttctgttttttgttttttta----ttttttattt-ttacatgtattttcgattatatatatatatatcacacacactgaagtagtctcagcattcagt
|   |      | ||||| ||  ||||||| ||||||||||| ||||| || || ||||| ||||| || || || |||||||| |||||||| ||||||||||   ||||      |  | ||  |    || | | ||   | |   || | |  ||  ||   ||  || |     |    || ||  ||| |    |    
GAAAGCTGAAAAGGAGGGATTTGAAGTAAGTGTTGCAAAGACAAGCTTTAAGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttcttaacccttctcttccaacacttctgtgttgactccgcataatctgaatggtaataattgattttctttatga-gatgttatctgaaatgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162239089|gb|FC416228.1|FC416228
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|19786466|gb|BQ040483.1|BQ040483
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGGCAGACACTGGCGAAATTCT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCT
EST: gi|67692532|gb|BJ952765.1|BJ952765
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162195482|gb|FC370899.1|FC370899
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162185503|gb|FC362572.1|FC362572
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162185502|gb|FC362571.1|FC362571
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATTTCCCGGCCAGACACTGGGGAAATTCTGGGTGTTCACATTTTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162167618|gb|FC343750.1|FC343750
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|7584064|gb|AW699962.1|AW699962
EST:     GCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: GCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162170368|gb|FC346773.1|FC346773
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|67694918|gb|BJ955151.1|BJ955151
EST:     AGCCAANCACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AGCCAA-CACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|208380575|gb|DC919361.1|DC919361
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162166908|gb|FC343293.1|FC343293
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
EST: gi|162239088|gb|FC416227.1|FC416227
EST:     AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAG                         ATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT
genomic: AAGCCAACACCAAGGCGCTTGCTGAGAATGAAGGCGAGGGACTAGCTAAGgtaaagcttc ... ttgcatacagATGATCTACCGGCCAGACACTGGCGAAATTCTGGGTGTTCACATTCTTGGT