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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGCAGACAAGGAACGGTGTCAAATCATCACTGGGCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCCCTGATTACCATCATGGCTCAGgtaaaggtcgcttaccttatacgaatagaactttaaggagaacttggataattcagcatagcatacccggctatgttattggaatatacggcagcttgga...

Basic information

species Physcomitrella patens
transcript PP1S30_339V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S30_339V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: AT4G25540.1 (Arabidopsis thaliana), 5'ss of exon 10
ACAAGCAGACAAGGAACGGTGTCAAATCATCACTGGGCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCCCTGATTACCATCATGGCTCAGgtaaaggtcgcttaccttatacgaatagaactttaag------gagaacttggataattcagcatagcatacccggctatgttattggaatatacggcagcttgga
 || |||||   ||||   || ||||| ||||| || || |||||||| || || || ||||| ||||||||||||||  | ||| |||| |||||||||||||      | |      ||  || |     ||         || |   |  || |||||  |||        || | |                          
GCATGCAGAAGGGGAATATTGCCAAATTATCACCGGACCTAACATGGGAGGAAAGAGCTGCTATATCCGTCAAGTTGCTTTAATTTCCATAATGGCTCAGgtaacataaacattaacagtagaaaaaatctcttgcatatgttgaaatgctaaatgattcaagatattcccattggttttccag----------------------

upper sequence: PP1S30_339V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: EFJ17558 (Selaginella moellendorffii), 5'ss of exon 10
ACAAGCAGACAAGGAACGGTGTCAAATCATCACTGGGCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCCCTGATTACCATCATGGCTCAGgtaaaggtcgcttaccttatacgaatagaactttaaggagaacttggataattcagcatagcatacccggctatgttattggaatatacggcagcttgga
    |  ||    ||||| |  ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || || || |||||| | |||||    |   ||  | ||||     |  |   |      |   |   ||  | |||                                            
TTCTGGTGAGGGTGAACGATCGCAAATAATCACTGGTCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCTCTAATCACAATCATGTCCCAGgttc--gcaactatctttatttcttttca--ctccgtatgttttgttatcgtgcag--------------------------------------------

upper sequence: PP1S30_339V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: EFJ17561 (Selaginella moellendorffii), 5'ss of exon 10
ACAAGCAGACAAGGAACGGTGTCAAATCATCACTGGGCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCCCTGATTACCATCATGGCTCAGgtaaaggtcgcttaccttatacgaatagaactttaaggagaacttggataattcagcatagcatacccggctatgttattggaatatacggcagcttgga
    |  ||    ||||| |  ||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||| || || || |||||| | |||||    |   ||  | ||||     |  |   |      |   |   ||  | |||                                            
TTCTGGTGAGGGTGAACGATCGCAAATAATCACTGGTCCAAAAATGGGTGGTAAAAGTTGCTACATCGGTCAAGTTGCTCTAATCACAATCATGTCCCAGgttc--gcaactatctttatttcttttca--ctccgtatgttttgttatcgtgcag--------------------------------------------

upper sequence: PP1S30_339V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: EFJ29021 (Selaginella moellendorffii), 5'ss of exon 10
ACAAGCAGACAAGGAACGGTGTCAAATCATCACTGGGCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCCCTGATTACCATCATGGCTCAGgtaaaggtcgcttaccttatacgaatagaactttaaggagaacttggataattcagcatagcatacccggctatgttattggaatatacggcagcttgga
    |  ||    ||||| |  ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || || || |||||| | |||||    |  |||  | ||||     |  |   |      |   |   ||  | |||                                            
TTCCGGTGAGGGTGAACGATCGCAAATAATCACTGGTCCAAACATGGGTGGTAAAAGTTGCTACATCCGTCAAGTTGCTCTAATCACAATCATGTCCCAGgttc--gcagctatctttatttcttttca--ctccgtatgttttgttatcgtgcag--------------------------------------------