1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CTCTATGGAAAATACAGAAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATGgtgagattctcctgtaaaagtcttcaccagtttagaagcattacaacagtgatggaagtatcactgagagaatgcgccctgatcgagttgtagtttgtgaattttgttttagacatattagaaggaggttatctcgatggctacagacacactgactgtcgcattgactattttctgtatttaatgacag
species | Physcomitrella patens |
transcript | PP1S279_72V6.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATG GCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACNAAAGTTGCEST: gi|208391821|gb|DC937997.1|DC937997
genomic: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATGgtgagattct ... ttaatgacagGCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGC
EST: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATG GCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGCEST: gi|162188380|gb|FC364250.1|FC364250
genomic: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATGgtgagattct ... ttaatgacagGCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGC
EST: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATG GCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGCEST: gi|162167720|gb|FC344034.1|FC344034
genomic: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATGgtgagattct ... ttaatgacagGCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGC
EST: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATG GCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGCEST: gi|208365822|gb|DC951057.1|DC951057
genomic: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATGgtgagattct ... ttaatgacagGCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGC
EST: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATG GCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGC
genomic: AAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATGgtgagattct ... ttaatgacagGCATATATGACAAATTTTCAGAAGCTTTTACGAAGGCAGTACAAAAGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTATGGAAAATACAGAAATGCAGGCCAGACTTGTGTTTGCGTCAACCGAATTCTTGTGCAGGATGgtgagattctcctgtaaaagtcttcaccagtttagaagcattacaacagtgatggaagtatcactgagagaatgcgccctgatcgagttgtagtttgtgaattttgttttagacatattagaaggaggttatctcgatggctacagacacactgactgtcgcattgactattttctgtatttaatgacag
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