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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgttgttctcattctgtatagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca...

Basic information

species Physcomitrella patens
transcript PP1S26_271V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 11
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgttgttctcattctgtatagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca
 || || ||||| ||||| ||||| ||||| ||| |||  || |  || ||||| ||||||||||| || ||||||||||| |||||  ||||||| |||||| |||||| ||  || | | || |  |||      |||||   || ||||  |  |   ||   ||  |  || ||   || | || |  |  |    
TGGCATCTTCCCTTATGTACTTAAACTGCTTCAAACAAGTGCAATGGAGTTGCGCCAAATTCTTGTGTTCATATGGACAAAAATTCTCTCTCTTGATAAGgtggtgttct-atgttgaaaacttgaaatctctgacagttcattttatttctcaagattcaggtatttacttagt-tgctctgtttttcaaatgacag--

upper sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 12
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgttgttctcattctgtatagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca
 || || ||||| ||||| ||||| ||||| ||| |||  || |  || ||||| ||||||||||| || ||||||||||| |||||  ||||||| |||||  |||||| ||  || | | || |  |||      |||||   || ||||  |  |   ||   ||  |  || |||  || | || |  |  |    
TGGCATCTTCCCTTATGTACTTAAACTGCTTCAAACAAGTGCAATGGAGTTGCGCCAAATTCTTGTGTTCATATGGACAAAAATTCTCTCTCTTGATAAGgtagtgttct-atgttgaaaacttgaaatctctgacagttcattttatttctcaagattcaggtatttacttagt-tgatctgtttttcaaatgacag--

upper sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 12
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgt-tgttctcattctgtatagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca
 |||||||| || ||||| || || ||||| ||| |||  || |  || ||||| ||||||||||| |||||||||||||| |||||  ||||||| ||||| |    |||   |    ||| ||||    || |||| ||     ||| |  |  |||      | |   |   | | || ||                 
CGGAATATTTCCTTATGTACTCAAACTGCTTCAAACAAGTGCAATGGAGTTGCGTCAAATTCTTGTGTTTATATGGACAAAAATTCTCTCTCTTGATAAGgtatgcactcttcattgtaatattttaagagttcttttatt-gtcttagattcaggtgtttaacgtttagttttttctcaaatgacag-------------

upper sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 12
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgttgttctcattctgtatagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca---------
 |||||||| || ||||| || |||||| | ||| ||||  |  | ||  | || || || |||||||| ||||||||||||||||| || |||||||||||  |  | |      | ||| |||  || | |  |  |  | | |||  |||| | |    |||      |  | || | || ||||||||||     |         
TGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGgtact--tttggaggagaataatttgact-taagataatgtaaattaga-ctatgttt----gcttaaaacgtatgtgca-tgttgtttagcttattttagagaaataa

upper sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 12
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgttgttctcattctgtatagtttatctc----ttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca
 ||||||||||| ||||| || |||||| | ||| ||||  |  | ||  | || || || |||||||| ||||||||||||||||| || ||||| |||||  | ||    |   | ||| ||| |||     | || |   | | |   ||| |   |  || |    |   |   |   | ||   |||||||||      
TGGAATATTCCCATATGTTCTAAAGCTGTTACAAACAACAACACCAGAACTACGACAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGATAAGgtacttttggagta--gaataatttgtcttaagataatgtaaattacaccggttttgcttaaaatgtaaatggctaaatgc-atgtttggtttagcttatttt-

upper sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 12
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgt---tgttctcat---tctgta-tagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca
 |||||||  || |  ||  | |||||||||||| ||||  ||| |||  | ||||| |||||||| || |||||||||||||| ||||| ||||| |||||        | || |   ||| |  | |||  | |||| || |        || |||  | ||   ||   | || |     |||    ||||||   |   |   
TGGAATATATCCTTGCGTAGTGAAGCTGCTGCAAACAACAACTATTGAGCTACGGCAGATTCTTGTTTTCATATGGACAAAGATCCTAGCACTTGATAAGgtacatgcagtttcgtatgtctctgcttgttcgtttcttgttatacctctgctacttccttttg--gggatgcattattaacgtga--ctctgttttcttcatg---

upper sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 12
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgttgttctca-ttctgtatagtttatctcttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca--
 |||||||| || ||||| || |||||| ||||| ||||  || | || ||  | ||||||||||||||||||||||||||||| || || ||||| ||||| |  ||   | | ||  ||  ||| | ||  | | | ||  || || ||    |||  |  | |  |  |   |  ||||   || |     ||  |    
TGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTGCACTTGATAAGgtatacttagaagtcctccattatttttttcacaatatattt-gagtatttgaggatgacaaagttgctacta--ttagaagacatgctccatatgttcttga