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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGCTGTTTCTTATGTCAAATTCTTATCTTCAAACGAGTTGGCATCTGCATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCGgtaggtcttgctgtttatgaagtcatgtttatttacttgcttcgtaagatttggtcttagaagacaatctatgatgatgtatcctgaaagtttcaaagga...

Basic information

species Physcomitrella patens
transcript PP1S264_64V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GRMZM2G126795_T02 (Zea mays), 5'ss of exon 13
TAAAGCTGTTTCTTATGTCAAATTCTTATCTTCAAACGAGTTGGCATCTGCATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCGgtaggtcttgctgtttatgaagtcatgtttatttacttgcttc--gtaagatttggtcttagaagacaatc-tatgatgatgtatcctgaaagtttcaaagga---
 ||||| || || ||||||||||||||||||   || ||| | |||||||||||||| || ||||| || ||| | ||||||||||||   || |   |||||     |||| ||| |||  |  |   |   | ||   ||    |  | |||    ||  |  | | || ||  || || ||   |    |||  | |  |   
GAAAGCAGTATCGTATGTCAAATTCTTATCTAACAATGAGCTTGCATCTGCATCAACAGATAGCACGTTACGTTTATGGGATGTCAAGGATAATTTGCCGgta-----tgctctttctgagatactccctccgtcctaaattaaaattcgttttatctttttagtagattcatacaataat-taatatatgtgttctatattatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37841212|gb|BJ599220.1|BJ599220
EST:     CATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCG                         ATAAGGACACTGAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCT
genomic: CATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCGgtaggtcttg ... gtgggtgcagATAAGGACACTGAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCT
EST: gi|162255325|gb|FC432051.1|FC432051
EST:     CATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCG                         ATAAGGACACTGAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCT
genomic: CATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCGgtaggtcttg ... gtgggtgcagATAAGGACACTGAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCT
EST: gi|37850577|gb|BJ608585.1|BJ608585
EST:     CATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCG                         ATAAGGACACTGAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCT
genomic: CATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCGgtaggtcttg ... gtgggtgcagATAAGGACACTGAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCT
EST: gi|37841051|gb|BJ599059.1|BJ599059
EST:     CATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCG                         ATAAGGACACTGAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCT
genomic: CATCAACCGACAGCACTTTGCGTCTTTGGGATGTCAAGTCGAACTGCGCGgtaggtcttg ... gtgggtgcagATAAGGACACTGAGAGGACATACCAACGAAAAGAATTTTGTTGGGCTATCT